KEGG   Ciona intestinalis (yellow sea squirt): 100187206
Entry
100187206         CDS       T01056                                 
Name
(RefSeq) nucleolar and coiled-body phosphoprotein 1
  KO
K03004  DNA-directed RNA polymerase I subunit RPA43
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100187206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cin03021]
    100187206
Transcription machinery [BR:cin03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Pol I specific subunits
     100187206
SSDB
Motif
Pfam: AP3D1 PCP
Other DBs
NCBI-GeneID: 100187206
NCBI-ProteinID: XP_002126279
LinkDB
Position
4:4852269..4856083
AA seq 622 aa
MFDIGDFASASEYVGKEYSSLEVITHKVHVALPAGYFGKIKSAIAIILNNNLQSYSEVLQ
GMPVAFNRQNVKLLTPYGKIIADQSCVHIDVETEYVVFKPTVTTTLQGVVNKQLKHSNMV
GCLVHGVFYASVNLEGSQNPGLGDEILFSVTKMEHDGYGYLALKGKFIRLISENPNKLEV
TQKRKPENDSGIDDDHETSSSPSTDLSIPLSQAVPSEDIPEIASQSKRKKKKDKISDEKK
QKKKDKKEKKKAKEMKKIKKEKKREKKEKKRMRKEKKVKKERLSLPNNVNTSLANNVNTS
FNEIEPWPATVAQPPHSDTSNTEESKDVCTTTQATKHVTNTTTHQQPSNPPPTDYSSVDE
AIESVVATTDKKIDTATDYSSVDEAITSVIASIHTNMGYDTNMPSVDAESVIAPKENIET
ATDYSSVDEAIDFVIAASQTNTDTAVKTEKVCNIPASPISKEQCSLTATIKDKSFATPST
TGKSPTKKKKKHSKNDKSHTSSATKEKKKLQETVNLTQLPAPSVTGKVSSSNEADEGVVD
KVKEKKSSKKRKLHYPEGESMLTNSPKKVKLSSESEAKSEEEIAMAYLKKMGITVNLEEK
VAIKLEDAPKHKKKKSKKSKKK
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgttcgatattggagatttcgcaagtgcttccgaatatgtgggaaaggaatattcctca
ctggaggttataacccacaaagtccatgttgcgctaccagctggttactttgggaaaatc
aagtcggcaatcgccataatcttaaacaacaacctgcagtcatacagcgaagtgttgcaa
ggaatgccggtcgcctttaatcgtcaaaatgtgaagttactaactccttacggaaaaatc
attgccgaccaatcctgtgttcatattgacgtggaaacagaatatgttgttttcaaacca
acagtaacaacaactttacagggagtggtaaacaagcagttgaagcattcgaacatggtg
ggttgtcttgtacatggagtgttttatgcatctgttaacttagaagggtcgcaaaatcct
ggacttggagatgagattctgtttagtgttaccaagatggagcacgatggttatgggtat
ttggcattaaaaggaaagtttatcaggttaatttcggaaaatccaaataaattggaagta
actcaaaaaaggaaaccagaaaatgattctggtatcgatgatgatcatgaaacaagtagt
tctccttctacagatctttctattcctttgagtcaagctgttccaagtgaagacattcca
gagattgcaagtcaatctaagaggaagaaaaagaaagataaaatttccgatgagaaaaaa
caaaaaaagaaggataaaaaagaaaagaagaaagcaaaagagatgaaaaagataaaaaag
gagaagaagagagaaaaaaaggagaaaaagagaatgaggaaagagaaaaaagttaaaaaa
gaaagactgagtttgccaaataatgtcaatacaagtttggcaaataatgttaacacaagt
tttaatgaaatagaaccatggccagctacagttgctcaaccacctcactctgatacaagc
aacactgaagaaagtaaagatgtgtgcacaacaacacaagcaactaaacatgttactaat
actacaacacaccaacaaccctcaaacccccctcccactgattattcttctgtagatgaa
gctattgaatcagtcgttgctacgacagacaaaaaaattgacactgccactgattattct
tctgtagacgaagcaataacttcggttatagcttccattcacacaaatatgggatatgac
actaatatgccttctgtagatgcggaatcggtcattgctcctaaagagaatattgaaact
gccactgattattcctctgtagacgaagctattgatttcgtcattgctgccagtcaaaca
aatacggatactgctgtaaaaacagagaaagtgtgtaacattcctgcaagtcctatatca
aaagaacaatgctccttaactgccaccataaaagataaatcttttgcaactcctagtaca
accggtaaaagccctacaaaaaagaagaaaaagcattctaaaaatgataaatctcatacc
agttctgcgacaaaagaaaaaaagaaattgcaagaaacagtgaacctaacgcaactacca
gctccttctgtgacggggaaagtttcttcttcaaacgaggcagatgaaggtgtggttgac
aaggtaaaagagaagaaatcgtctaaaaaacgcaagttgcattacccagagggtgaaagt
atgttaacaaactctccgaaaaaagtaaaactttcctctgagagtgaagcaaagtcagaa
gaagagattgcgatggcttatctcaagaaaatgggaataacagtaaatttagaagaaaaa
gttgcaataaaacttgaggatgcaccaaaacacaaaaaaaagaagtctaaaaaatcaaaa
aaaaagtaa

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