Ciona intestinalis (yellow sea squirt): 100187252
Help
Entry
100187252 CDS
T01056
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100187252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100187252
Spliceosome [BR:
cin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
100187252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
PRP4
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
WD_LRWD1
Ge1_WD40
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
WD40_like
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
100187252
NCBI-ProteinID:
XP_002129932
Ensembl:
ENSCING00000001299
LinkDB
All DBs
Position
9:2521965..2526600
Genome browser
AA seq
512 aa
AA seq
DB search
MSDAENEGGENAEVATEEKPLSAQYGSLEGKVGSKQEAIDMGIKAGNINISDPSETMEMT
MEERINKRQAEILAEFERKKKIRQIQVTTDDDEIKKLLRERNLPVTLFGEGPADRRERLR
ESIAEIGPIKNKNAEEMAAKRKEEAQLTRTTWYHEGSDSLKTARLWIAQYSLPRARQRLK
KAREFGALPENQKNSKLQQTHRHMQGVASYCSQIGHSRPISFCEFSPDSKMLVTSSWDGL
CKLWSIPDCEEIRTLRGHQSNVGCITFHPFATTQLDNSAACLASCSTGGEVKLWNLESDE
SVADLNGHEMRVARVAYHPSGRFLATTCYDKSWRLWDLESTQEVLHQEGHSKGVHDISFQ
IDGSLCVTGGLDAYGRVWDLRTGRCIYFIEGHLKEMYAVCFSPNGYQIATGSADNTVKIW
DLRKTSCVYTIPAHTNLVSRLQYQKSDGNYLVTGSYDGTAKIWGYPAYVPLKTLAGHEGK
VMCVDGSPDGEFIATSSFDRTFKLWAKETNPL
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgctgaaaatgaaggtggtgaaaatgctgaggtcgcaacagaagaaaaacca
ctttcagcgcaatatggaagtttggagggtaaggttggttcaaagcaagaagcaattgat
atgggtattaaagctggaaatatcaatattagtgatccaagtgaaacgatggagatgaca
atggaagaacgaatcaacaaacgacaagcagaaattcttgcagagtttgaacgaaaaaag
aaaattcgtcaaatccaagtcacaacagatgatgatgaaattaaaaagttattaagggag
cgtaaccttccagtgacgttgttcggtgaaggacccgccgatcgtcgtgaacgacttcgt
gaatcaatcgctgagattggaccaatcaagaacaagaatgctgaagaaatggcggcaaag
aggaaagaagaagcacagctcactagaacaacatggtatcacgaaggttctgatagcttg
aagactgcgaggttatggattgcccagtattcattaccaagagcaagacaaagattaaag
aaagcgcgcgagtttggtgctctgcctgaaaatcaaaagaattccaagcttcaacagact
cacagacacatgcaaggtgtagcaagctactgcagtcagattggacactcccgcccgatc
tcattttgtgaattcagccccgacagtaagatgcttgtcacttcttcatgggatggtcta
tgtaagctatggtcaattcctgactgtgaagagataagaacattaaggggccatcagtcc
aatgttggatgcatcacttttcatccctttgctacaacccaactggacaactcagcagca
tgtttggcatcatgttcaacaggtggtgaggtcaagttgtggaatcttgaaagtgatgaa
tcagttgctgaccttaatggtcatgagatgagagtggcaagagttgcctaccatccttct
ggaaggttcctagcaactacatgttatgacaaatcttggaggttatgggaccttgaatca
acccaagaagttttacatcaagaaggacatagcaaaggagttcatgatatttcttttcaa
attgatggttcattatgtgttactggtggtttagatgcgtatgggcgtgtatgggattta
aggacaggtcgctgcatctactttattgaaggacatctaaaagagatgtatgcagtttgc
ttctcaccgaacggatatcaaatagcaactggcagtgccgataatacggtaaagatttgg
gatcttcgtaaaactagctgcgtttacaccatacctgcccacactaacctggtatctaga
ttgcaatatcaaaagtcagatggcaattacttggtgactggatcttatgatggaactgca
aagatctggggttatccggcttatgtgccactcaaaacacttgccggtcacgaggggaaa
gtaatgtgtgtagatggctcaccagacggagaatttatcgctacatcttcttttgatcga
acatttaaactttgggcgaaagaaacaaacccattataa
DBGET
integrated database retrieval system
