Ciona intestinalis (yellow sea squirt): 100187414
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Entry
100187414 CDS
T01056
Name
(RefSeq) RNA-binding protein 39-like
KO
K13091
RNA-binding protein 23/39
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100187414
Spliceosome [BR:
cin03041
]
Common components
Common spliceosomal components
General mRNP proteins
100187414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
PRP38_assoc
RRM_7
RBD_DEAH11
RRM_3
Motif
Other DBs
NCBI-GeneID:
100187414
NCBI-ProteinID:
XP_018670586
Ensembl:
ENSCING00000020692
UniProt:
A0A1W5BDZ3
LinkDB
All DBs
Position
Unknown
AA seq
465 aa
AA seq
DB search
MTDDIDVEAMLEAPFQKSSEKEAKKKSEKKSRKRSRSRSRSRSRRHRRSRSRSRSRDRKR
SSRGGKRSRSRERRRHRSRSPRRSPKRVSPPKPRSPSPPDRDARTIFCMQLAQRIRVRDL
EEFFSSVGKVREVKLIQDKHSKRSKGIAYVEFKDLESIPLALGLSGQKLLGVPIVVQPTQ
SEKNKIAAAQLSLQKAALGPTKLYVGSLHENITEEMIKGIFSPFGRVEQVQIIKDDAGAS
RGYGFITFAEAECAKRALDQLNGFEIAGKPIKLNTVSYGTDMNAMQGLASGPSFLDNDAV
ERAGIDLGTTGRLQLMAKLAEGTGLEVPSAAQQALYLGQSMGLGLPQSAAGTTGAPPIAT
TCFQLSNMFDPLNETGSSWDKEIRDDVIEECQRHGAVYHVFVDKQSKGNVYVKCDSVSAA
ANSVAALHGRYFAGNMITAAYVPVVNYHSLFPDAAYSTTPLKPGQ
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgacattgatgtagaagctatgctggaagctcctttccagaagagcagtgaa
aaagaagcgaagaaaaagagcgagaaaaagtcccgaaagcgaagcaggagccgatcaagg
agtagaagcagaagacacagaagatcgaggtccagatcaagatccagggatcggaagagg
agcagcagaggtgggaagcggagccgttctcgtgagaggagaagacatcgatctagatcg
ccgagaagaagtccgaagagagtctcgcctcccaaaccgagatcaccaagtcctcccgat
cgagatgcgaggaccatattctgcatgcaacttgctcaaaggattcgggtccgagattta
gaagagtttttctcatctgttgggaaggttcgcgaagtaaaacttatccaggataaacat
tcaaagaggtcaaaaggcatcgcgtatgttgagttcaaggatctcgaatctattccatta
gcgcttgggctaagtgggcagaagttacttggagttcctatcgtagtgcaaccaacacaa
tcagagaaaaataaaatagcagctgcgcagctaagtttgcagaaagcagcgcttgggccc
acaaagctatatgttggttcattgcatgaaaacatcacagaagaaatgatcaaggggatt
ttttcgccgtttggtcgagttgagcaagttcaaattataaaggatgacgctggggcgtca
cgtggatacggtttcattactttcgctgaagctgagtgtgcaaaacgtgcgcttgaccaa
ttgaatggatttgagattgctggcaaaccaattaagctgaacactgttagttacggaact
gatatgaatgcaatgcaaggtttggctagtgggccttcattcttggataatgatgctgtt
gaaagggctggcattgatcttggtacaacaggaaggttgcagctcatggcgaaacttgct
gaaggaactggcttagaagttccgtctgctgcacagcaagctttgtatcttggccaatcc
atgggtctcggccttccacaaagtgcagcaggtaccacaggtgcaccaccaattgctaca
acatgcttccagttatctaatatgttcgatccattgaatgaaactggttccagttgggat
aaggagatacgtgacgacgttattgaggaatgccaacgtcatggagcagtttatcacgtt
tttgtggacaagcaatcaaagggaaacgtttatgtgaaatgtgattctgtatctgcagca
gctaattcagttgcagctctgcatgggagatattttgcagggaatatgataactgccgcg
tatgtacctgtagtaaactaccattccctattccctgatgctgcttattcaaccactcca
ttaaaacctgggcagtaa
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