Ciona intestinalis (yellow sea squirt): 100187436
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Entry
100187436 CDS
T01056
Name
(RefSeq) Fanconi anemia group I protein-like
KO
K10895
fanconi anemia group I protein
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
100187436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cin03400
]
100187436
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FANCD2-I complex
100187436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FANCI_HD2
FANCI_S4
FANCI_S1
FANCI_S2
FANCI_HD1
FANCI_S3
YmgB
DUF4484
Motif
Other DBs
NCBI-GeneID:
100187436
NCBI-ProteinID:
XP_009858757
LinkDB
All DBs
Position
5:complement(2927346..2940725)
Genome browser
AA seq
1344 aa
AA seq
DB search
MLDQEAESTDSIVEKIKSQSLSSLNKLVKDALRPGNHEKCMELLRAIFLAWESRPELSEV
VSTIYKMCLKFVQDANVRNSFVMDLTDLLNHEAIRLSPSELVELCSIMLTMIHNGEVGDG
KWLKIFTKIVKVAELHSSIRYEKSEDVVSGTKYKKYIVRELCSYRWPTESVVNLANMFKD
IKLESDEIDSVLLKLLDQLHTIDPQQLPPYVYQLLGLSSSCGKVEIALLGVLKHFVSLDE
KLAEEEHSMNIDSENSLNMSVTSTNELRSVEGTVLLYISNTVRQNHALGKGLMKILKSAK
ETLSHEVMSPFFIALGLVLAQDSRYNEETQTLVRLIINKSCQDRHKMQKSKWLQEVTKFP
PNVKDILLKVVKNCRNGWEYVLSGILDLGFNLMSCYGPKPGAFGRCMEREIAKSHSPRQE
CCDIGLTLLAATFKTHHITRKDIIQRVIDQIQSSSDMPAYHFIRLLKEIIKTYPYAFQQS
INQLKALLEEMYMMHPYNAHKLLPAIMPLVKNNGALRDSLLVVLRKLLSSRDVNCRISAA
TGFLLVVQNFPLSEITSLSQISSQSTQSIFSTASTQTQSQLVGSQGRKVNNELLCLEVLQ
TLSQHCFTQQAEVKIIIYRNLAEVVATNPRLTPYILDYLLNHLKLYYEESEDIIPPFKLS
KCIATSADKSVLAEPFAALLSTIHLCVYKLRTNLNEEEFEEILDNEVVENIHGIFRSLTQ
RMCKCELEDFLLEKDSDFSMTTKVGQRNYFTVGLVLSLYNVLIEHNASGKELTCENAEGI
LTLHSCVKRIQDFIQSTKSTELTSKLFNENQHQPVVLLHVSNLVYSLFFDDSMEGDAIDL
LRRNDNFIKHFIHTMHNLLIFTKDHGYFPGIGGLNKKEMLSCMARVGKSTLHKFMMEKND
PCQSPVTLLCLECFHLTFLYVGTWHPDHMIQFTSDVISRDDEVSQPDQHNITMLLKRFQR
LVTTYTAPDNSPLSATHRKVVAELTNLISTLVTTATNLNLSSTIEEAAKWTRKICADQKI
DDTNSVKRIVHLVLQTNNLCSTNVDSIFYNICSDLRNELGSIEQSDESQSETKFRIVTEE
NSHVVIPVVVGHLDSVMQDMSWLISDMKGRLGNNGSKRKDVDPDDDDEVNEERRKAEGSL
CGRITKIAMGLLDLAQTSATGAANLEQFVQAFTTFFTFLNIFSKFYIWIYSQGIGHIPSS
FEKLCKFVNSDLLQYVYSFIMHVESTQSERLGTAKAKKDGKKKSKTKLPEKIQAMSTDKK
LRETKGVAKLIYSIEQHEKNLALLGRRAKVDLMRHHRLTTTRDFRIMNDVIRRSRDEEEA
DKDSEVDENEEPTNKRPCLQTSVV
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgttggaccaagaggccgagtctacggacagtatagtggagaagatcaagtcacaatct
ttaagttcattaaataagcttgtaaaggacgctctaaggcctggtaaccatgaaaaatgc
atggaacttttgcgagcaatatttctcgcttgggagagcagacctgagttatctgaagtg
gtttctacaatttacaagatgtgtttgaagtttgttcaagacgccaatgtccggaactca
tttgtaatggatttgacagacttactaaaccatgaggcgatccgcctttccccatctgag
ttggtagagttatgttccatcatgttaaccatgatacataatggggaggtgggcgatggt
aaatggctcaaaatattcactaagattgtaaaggtggctgaacttcacagcagtattcgt
tacgagaaatcagaggacgtggtcagtggtactaagtataagaagtatattgtgcgagaa
ctttgttcttatagatggccaactgaatctgttgtgaatctggctaatatgttcaaggac
ataaaactggaatctgatgaaatagattctgttttgttaaaacttcttgaccagctacac
accattgacccccagcagcttccaccctatgtttaccagttgttaggtttatcatcaagt
tgtggaaaggtggaaattgctctgcttggtgttttaaaacattttgtgtccttggatgag
aaattggctgaagaagaacattcaatgaatattgacagtgaaaattcactaaacatgtca
gttacgagtacaaatgaattacgatctgtagaaggaacagtccttttatatatcagtaac
actgttcgccagaatcatgctttagggaaaggacttatgaaaatactaaagagtgcaaaa
gagacactctcccacgaagtaatgtcaccatttttcattgctcttggattagttcttgcc
caggatagcagatataatgaggagacacaaacacttgtgcggctgattattaacaagagt
tgccaggacaggcataaaatgcagaaaagcaaatggcttcaagaagttacaaaattcccg
cccaatgtaaaagacatcttgcttaaagtggtgaagaactgtaggaatggttgggaatat
gtccttagtggaatactggatctcgggtttaaccttatgtcatgctatggtccgaaacca
ggagcgtttgggcgatgcatggaaagagaaattgccaaatcgcattcaccaagacaagaa
tgttgtgatattgggttgacgttactggctgctacgtttaaaacacatcatataactaga
aaggatattatacaacgtgttattgaccaaatacaatcaagttccgatatgcctgcttat
cattttattcgtttactaaaggaaataataaaaacctatccatatgcatttcaacaatct
ataaatcagctaaaagcattgctagaagaaatgtacatgatgcatccgtacaatgcacac
aagttattaccagcaattatgccacttgtaaaaaacaacggtgcattaagagattcacta
cttgtggttcttcgtaagctgttgtcttcacgtgatgtaaactgtcggatttcagcagct
actggcttcttactcgtcgtacaaaactttcctctttctgaaataacttcattaagtcaa
atatcaagtcagtcaactcagtctatattttcaactgccagcactcaaactcaatcacaa
cttgtaggcagtcaagggcgcaaagtaaacaatgaacttctttgcttggaagttttacaa
acattatcccaacattgcttcacccaacaagcggaagtgaaaataataatttatcgaaat
cttgctgaagttgttgccacaaacccacggcttacaccatatatattggattacttgctt
aaccatttaaagttatattatgaagagtcagaagacataattcccccgtttaaattatcg
aaatgtatcgctacctctgcggataaatctgtgctggctgaaccgtttgctgctttgctt
tctaccatacatttatgtgtgtataagcttcgaacaaatttaaacgaagaggaatttgag
gaaatactggacaacgaggttgttgaaaatattcatggaattttccgttctctcacacag
agaatgtgcaaatgtgaactagaggatttcctattggaaaaagatagtgatttttccatg
acaacaaaagttggacaacgtaattattttactgttggtttggttttgtcactttacaat
gttcttattgaacacaatgcaagtggaaaagaactaacttgtgaaaatgctgaaggtatc
ctcacattacatagttgtgtgaaaagaatacaagatttcattcaatcaacaaaatcaaca
gagctgacgagtaaattattcaacgaaaatcaacatcaacctgttgttctactgcacgta
tcaaatctggtttattcattattctttgatgactccatggaaggagatgcaattgatttg
ttacgaagaaatgacaactttatcaaacacttcatacacacgatgcacaatctacttatc
ttcacaaaagatcacggatattttcctggcattggaggattaaacaagaaagaaatgtta
tcatgcatggcgcgtgttggaaaatccactttacataagtttatgatggaaaaaaatgat
ccttgtcagtctccagtgactttgttgtgtcttgaatgctttcatcttactttcttatac
gtggggacatggcaccccgatcatatgattcagttcacttcagacgttataagtcgagat
gatgaagttagtcaaccagaccaacataatataaccatgctattaaaaagattccagcgt
ttagttaccacgtacactgcaccagataattcaccgctttcagccacgcatagaaaagtt
gttgctgagctcaccaacctcatatccacgcttgttaccacggcaactaatctcaacctc
agctccacaatagaggaagcagcaaaatggacacgaaaaatttgcgccgaccaaaaaatt
gacgacacaaattcagtgaagcgtatcgtgcatctcgttctacaaaccaacaacctctgt
tccacaaacgtggattcaatcttctataacatttgttctgatcttcgcaacgaactcgga
tccattgaacaaagtgatgagtcacaatcggaaacaaaatttcgcatcgtcaccgaggaa
aattcacacgttgtaattccggtcgtggttggtcatcttgattcagtgatgcaggacatg
agttggttgataagtgatatgaaggggaggttggggaacaatggaagcaagaggaaggat
gttgatccagatgatgatgatgaggttaatgaggagagaaggaaagcagaaggttcatta
tgtggtagaattaccaagattgccatgggattgttagacttagcacaaacatcggctaca
ggagctgccaacttggagcaatttgttcaagcgtttaccactttcttcactttcctgaac
atattctcaaaattttacatttggatctattcacaaggcattggccatatcccatcaagt
tttgaaaagttgtgcaaatttgtcaactctgacctactccagtacgtctatagtttcatc
atgcacgtagaatcaacacagtctgaaaggctcggaacagctaaagcgaaaaaagatgga
aagaaaaaatccaaaaccaaactgcctgagaaaattcaggcaatgtcaacggataaaaaa
ttgcgcgaaacaaagggagtagcaaagttgatttactccattgaacaacatgagaagaat
cttgctctgctcggaagaagagcaaaagttgatctgatgcgacatcatcgtctcacaacc
accagggatttccggatcatgaatgatgtaatcaggaggagcagagatgaggaagaagct
gacaaagactctgaagttgacgagaatgaagaaccaaccaataagagaccttgtctacaa
acctctgtagtctaa
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