KEGG   Ciona intestinalis (yellow sea squirt): 100187494
Entry
100187494         CDS       T01056                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL isoform X1
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100187494
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:cin01009]
    100187494
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cin03021]
    100187494
Protein phosphatases and associated proteins [BR:cin01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100187494
Transcription machinery [BR:cin03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     100187494
    Little elongation complex (LEC)
     100187494
SSDB
Motif
Pfam: ELL Occludin_ELL UBR1-like_wing FKBP15 DUF5683
Other DBs
NCBI-GeneID: 100187494
NCBI-ProteinID: XP_002128540
LinkDB
Position
11:508038..533585
AA seq 679 aa
MAIDLSEGEYALQQNTSNIQIIQLKLTDSALRAVESYQNLQGDRVSKPTIRFNGNQGSIR
IPTDGGNDTQTFTFQLSALNQSAAIDGVQQYYTGDTRGRISIMGAIQHKITVNANDESYN
ATRKRMTLVKEQEQKTSTKEIKQPSSSKLGKKKLVNRRIRDQHLNNVRTSTPPPGRPTNN
TSFARSASPLTTAPNRSVSPVTGSVSEAGIRNKTKPILSSFASSSSQPTTAQSGGKPLSE
RVTHYLALRPLKFQELMIRLSRDQGQPDAAKLRGILQQVAASRTVGMGVQEFVLNKQLLN
EVHADWPGYTEEERVQVRRKLAEFTIKSSENRKRPAGGTPETATRDTPNTSPQSKNEDYT
NPLRKKQRVSLYQKTSPSGPRSVSPLETSGMLSLSSTVAPAIISGKIAQLKEEETPSASF
DRNSSPKKKNADENQRPGSANSRSSKPSPKPMARLSPKKPDPDVSPSKNSSLNTSTQRRS
DQTRRANPPKQANEQNRANDSFAAFENQEAILDTSRNNPNKTQDEFLKKYKVIEGSDQRN
KYRQDFSAEYKEYLLLYAKVAAEAKRFAEWQMQLKEQKEGTDQYKVIQRRVLHEYSKLKE
NAEYWKDRTRMQYLHRKLKHIKELVLQYDSRQAEIDRPRDSRREKRSRVPASDDDDDDPR
AHAHNRSANVVRKRPVLTA
NT seq 2040 nt   +upstreamnt  +downstreamnt
atggcaatagatttatctgagggtgaatatgctcttcaacaaaacacatccaatattcaa
attattcaactcaaattaacggattctgcgctaagagctgttgaatcgtaccagaatcta
cagggagacagagtaagcaaaccaaccattcgcttcaatggaaaccaggggagcataagg
atacctaccgacggtggaaatgacacgcaaacttttacattccaattatcagcattgaac
caatccgcagctatagatggtgtgcagcagtattataccggagatacaagaggccgtatc
tctattatgggggcaattcagcacaagatcacggttaacgcaaacgacgaatcgtacaac
gcaacgcgtaaacgcatgacattggtaaaagaacaagagcaaaaaacaagcacaaaagag
attaaacaaccatcttcatctaaacttggaaaaaagaagcttgttaatcgtcgaatccga
gaccaacatttaaataatgtccgtacgtccacacccccacctggtagaccaaccaataat
acatcatttgcaagatctgcatctcccctcaccacagctcccaaccgatccgtctccccc
gtcaccgggagtgtctcggaggcggggatcaggaacaaaaccaaacccatcctctcatct
tttgcttcatcatcttcccaacctactaccgcacaaagtggaggaaaaccactcagcgaa
cgagtgacgcactaccttgcactgcgtcccctcaagttccaggagttgatgattaggttg
agtcgagatcaaggacaacccgatgctgcaaagttgcgcgggatcctacaacaggttgca
gcctcacgtacagtgggcatgggtgtgcaggagtttgtgttgaacaaacaactattaaac
gaggttcatgctgattggccgggttatactgaggaggagagggtgcaagttagaaggaag
ttagcagaatttacaatcaagtcatcggagaatcggaagcgacctgctgggggaaccccc
gaaaccgctactcgtgacacccctaatacttcaccccaatccaagaacgaggattacaca
aacccgctacgtaagaagcagcgagtttcgctttaccagaagacgagcccgagtggtcca
aggtccgtgtctcccctggaaacaagcgggatgttgagtttgagctccacggtcgctccc
gctattatttcgggtaagatcgctcaactcaaagaagaggaaacaccatccgcatccttt
gatcgaaactcaagcccgaaaaaaaagaacgcagatgaaaaccagaggcctgggagcgca
aacagccgtagcagtaagccaagccccaaacccatggctcggttatcgcccaagaaaccc
gatccagatgtttctccttctaaaaactcctctctcaacacaagcactcaaagaagatca
gatcaaacaagaagagcaaatccacccaaacaagcgaatgaacaaaacagagcgaatgat
tcattcgctgctttcgaaaatcaagaagctattcttgatacaagcagaaacaatcctaat
aaaacacaagatgaattcctaaaaaaatacaaagtaatagaaggcagtgaccaaaggaac
aaataccgacaagatttttcagccgaatacaaagaatatcttctactttacgcaaaggtt
gcagcggaagccaagaggtttgcagagtggcagatgcagttgaaggaacaaaaagaagga
actgaccagtacaaggtcatccaaaggagggtgttacatgaatactccaaacttaaagag
aacgcagagtactggaaagaccgcacccgtatgcagtatttacaccgcaagttgaaacac
atcaaagaactcgttctgcaatacgacagtcggcaagcggagatcgatagaccgcgagac
tctcggcgggaaaaacggtcccgagttcccgcgtccgacgatgacgacgacgatccccgc
gcccacgcccacaaccgctcagcgaacgttgtgcgaaagcgcccggtgctcaccgcttag

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