Ciona intestinalis (yellow sea squirt): 100187500
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Entry
100187500 CDS
T01056
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100187500
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cin01009
]
100187500
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100187500
03029 Mitochondrial biogenesis [BR:
cin03029
]
100187500
Protein phosphatases and associated proteins [BR:
cin01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100187500
Membrane trafficking [BR:
cin04131
]
Autophagy
Autophagosome formation proteins
ULK complex
100187500
Mitochondrial biogenesis [BR:
cin03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
100187500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
NLPC_P60
TASOR_alpha-beta
Motif
Other DBs
NCBI-GeneID:
100187500
NCBI-ProteinID:
XP_002122437
LinkDB
All DBs
Position
Unknown
AA seq
1386 aa
AA seq
DB search
MSLHVFLVNRGHMTNLDVDWAMKRVSDLKRAVSTKFDVKPEKQVMLTSGGQVLDDEQKVC
SYPVGTESNPIYLFNKSMMEQSALLSNKTIVKSGFDKEIHNSLHLPVCYGTLHSRTQLAM
QIHEETRHQVATMETLVADEHLMFQGWQAAVSNLHVSLVDFKQRLSSMRDQCSLMLSKST
NHIEVLNGFEEVLEMLSRIPVVESLLKSDESSGVTLLEWIEGKSPGVKIADLIEDCRQRV
SQLTTDKLSALLLECDKVTTQATNPRMREISGIVDRLAALDHVINAARQQVAEQRGIAQG
FVKNQDTARDLQEGSMNRDTLRTLCESHVTQLQIMRDNESATREALIKCDSAKSELAQNL
HTRLRWLHFVQRSILNADVKISMFREQLTQLCHQVEFLTEVKKSPEIYFSSVAECKRRKY
FSQAFTQWTDGVLAASKVARDREIVRRKNFKSEFKNHFLQKLFPGFTDRPPLISKRPIRP
FDLNLPQLTDNEVDQLGKLFPEFKPPQVQPSIACFPDATQLSWQLVVSTSTKTTLDFQQS
SIMPSMTSQSMMSSIDSIPPQGEAIQPVDQSDQRIFRSLKPDTDYTTGGFVTSSIQNIID
DKITKSEFLKSFETPRLLSPPSVEVGSPDSGEFFSILPLEPHAPPTPMTPITEGVQQSTP
SKNMEQSKMLTSEDTDEMFHSFTSDVEKEKVLKKIKELEENNLLQNEESNKLIRKLQEEV
DSLQRSRDAVVADFDRRWSESRGELENVIGQLEREQEERRSGWEEEEKLRREIKELEAKC
LKLEENNNSLKTEVAAKVGLMSEIESDAKCRINEMKIEVAHAEEKSEREVWAVKRDCGSE
VEALKMKNYELEKELSQQVCELVGSGDRVQELEEQLSVAEGEVVRLKGVVLKVKGQIEGH
EKVVAEGRVAVSNMEDELRLGRDKVAQAERTVAKLESTNEELTMLLGGYEGELERCRGLE
GEVRECNVVVEELNGRLEVTQQKLDDVSGKLLLSQQELSESENKYRLLVEEFSKDRETLN
EKYLTLEGDMEKLKSKHEEDFEKFRENLKTENEREVEIMKQQVVDVESKYQQEIQQNNDK
WSINVDEINKKYRSELDEMEADRLLSVVSAQQLTDDAKQKFQRITNEHESLLVVVETLRS
ENEKLKASQNLNVPSMTSSLMTSQLMTSSNGEKESKRTKMDDSIMTSSKYDCDVTGSMVV
SLQEHQMTLESAYKSFESQRNALETSYKKKEEDATRRRQMVFNSAIQRVTSAKDDEIQRL
RKIIDESATAIVSQHDSGENETAASSSTKLKEKISISNFEPGDLVLVTYDTHYRHHVVVT
LTHTLHFLHNDSMNELGLKHNEPSNKTWLLSRFIDREYCQARKPNNRFKVPVGTKFYRVR
LSNVKK
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgagtctccatgttttcctcgttaatcgaggtcacatgaccaatcttgatgttgattgg
gcaatgaaaagagtctcggacttgaagcgagccgtctcgaccaagttcgatgtgaagccc
gagaaacaggtgatgctaacaagcgggggtcaggtgctagacgacgagcagaaggtatgt
tcgtaccccgttggtacggaatccaaccccatatatttattcaataaatctatgatggaa
caatcggcattattgagcaacaaaactattgttaaatcaggttttgacaaagagatccac
aattcacttcaccttcccgtatgttacggcacattacactcgcgtacacaacttgcgatg
caaatacacgaggaaacacgccaccaagtggccactatggaaactttggtagcggacgag
catcttatgtttcagggatggcaagcagccgtatcaaacctccacgtctcattggtcgat
ttcaaacaaaggttatcgtccatgcgtgaccagtgttcgctcatgcttagtaaatcaacc
aatcacattgaagtattgaacggttttgaggaagttttagaaatgctgagtcgcattcct
gttgttgagtcgttgttgaaaagtgatgagtcatcgggagtgactttgcttgaatggatc
gaggggaaatccccaggtgtaaaaatcgccgacctcatcgaagattgccgacaacgagtc
tcgcagttaacgacagacaaactatcggccctcctcctcgagtgcgacaaagtaacgacc
caagccaccaatcctaggatgcgggaaatatcgggtattgtcgaccgattggctgcgttg
gatcatgtgatcaacgctgctaggcaacaagtagcggaacaacgaggaattgctcagggg
tttgtgaagaaccaggacacagctcgcgacttacaagagggttcaatgaaccgcgacact
ttacgtacgttatgtgaaagtcatgtgacccaacttcaaatcatgcgcgacaatgagtca
gcaacgagagaagctcttattaagtgtgactcggcaaaaagtgaacttgcacaaaacctt
cacactagattaagatggttacattttgttcaacggagcatcctaaacgctgacgttaag
atttctatgttccgcgaacaactgactcagttatgccaccaagtggagtttttaaccgaa
gttaaaaaatctccggagatttatttctcttcggtcgccgaatgcaaacgaagaaagtat
ttctcgcaagcattcacgcagtggaccgacggagtactagcggcatcgaaggttgcaaga
gatcgagaaattgttcgaagaaaaaactttaaatcagaattcaagaatcatttcttacag
aaattattccccgggttcaccgaccgacccccgttgatatcgaaacgacccattcgacct
tttgacctcaaccttccacaattaaccgataacgaggtcgatcaactcgggaagttgttt
ccggagtttaagccgccacaggtccaaccatcgatcgcgtgtttccccgacgccactcaa
ctatcgtggcaactcgtggtttcaacttcaactaaaacaaccttggatttccaacaaagc
tctataatgccatctatgacatcacaatctatgatgtcatccatcgattccatcccaccg
caaggggaagctatacaacccgtcgaccaatcagatcaaaggatttttcgaagtttgaaa
cccgacactgattacacaacaggggggtttgtgacatcatcaatacaaaatatcatcgac
gacaaaataacgaaaagtgaatttttgaaaagtttcgaaactccacgtttactatcgcct
cctagtgtggaagtgggcagccccgattctggggaatttttcagcattctcccgttggaa
ccccatgccccacccacccccatgacccctataacggagggggtgcaacaatcaacaccc
agtaagaacatggagcaatctaaaatgttgacgagcgaggacaccgacgaaatgtttcat
tcattcaccagcgatgtagagaaagaaaaagttttgaagaaaatcaaagaattggaagaa
aataatttgttgcaaaatgaagaatcgaataaattaattcggaaactccaagaagaagta
gatagtctccaacgcagtcgagacgccgttgttgcagattttgatcgtcgttggtcagag
tcgcggggtgaattggagaacgtgattggtcagttggagagggagcaggaggagaggagg
agtgggtgggaggaggaggagaagttgaggagggagatcaaagaacttgaagcaaaatgt
ttgaaactcgaggagaataacaatagtctcaaaacagaagtggcggcaaaagtcggtttg
atgtccgagatcgaatcggacgcaaaatgtcggatcaacgagatgaaaatcgaggtcgct
catgcggaagagaagtcggaacgagaggtgtgggcggtgaagcgcgactgtgggtccgag
gtcgaggctttaaagatgaaaaattatgaattggagaaagaattgagtcagcaagtttgt
gagttggtgggaagcggggaccgggttcaagaactcgaggagcaactgtcggtggctgag
ggggaggtggtgaggttaaagggggtcgtgttgaaggtcaagggtcaaatcgagggtcac
gagaaggtcgtcgccgagggacgagttgctgttagcaacatggaggacgagttacggttg
ggtcgtgataaagtcgctcaagcggaacgtacggtcgcgaagttggaatcgaccaatgag
gagctgacgatgttgttaggggggtacgagggtgagttggaacggtgtcgggggctcgag
ggggaagttagggagtgtaatgtggtggtggaagagctgaacggaaggttggaggtgact
cagcaaaagttggacgatgtttccgggaaactattgctgagtcagcaggaattatcggaa
agtgagaacaaatatcgcctcctagtggaggagtttagtaaagaccgggaaaccctgaac
gagaaatatttaacacttgagggagatatggagaaattaaaatcaaaacacgaggaagat
tttgaaaaatttcgcgaaaatttaaaaactgaaaacgaacgcgaagttgaaatcatgaag
caacaagttgttgatgttgaatctaaatatcaacaagaaattcaacaaaataacgataag
tggtcgatcaacgtcgatgaaatcaataaaaagtatcgatccgagttagacgagatggaa
gccgatcgattgttatcggtagtctcagcgcagcaactgaccgatgatgcgaaacaaaaa
tttcaacgaataacaaacgagcacgagtcgttgttggttgtcgtggaaacgttacgctcg
gaaaatgaaaaattaaaagcgtcccaaaatcttaatgttccgtctatgacatcatcgttg
atgacatcacaactgatgacatcatcaaatggggaaaaagaatctaaacgaacaaagatg
gacgacagcattatgacatcatcaaagtatgattgtgatgtcacaggctcaatggtcgtg
tcactacaggaacaccagatgacgctagagagcgcatataaatcgttcgaatctcaacgt
aacgcgctcgaaacatcgtataagaagaaggaggaagacgccactaggaggcgacagatg
gttttcaactctgcgattcagcgagtcacttcggcaaaagacgacgaaattcaacgactt
aggaaaattattgatgagtcagcaacagctattgttagtcagcatgactcaggggaaaat
gaaactgccgcgtcatcttcgacaaaattaaaggaaaaaatttcgatttcaaattttgaa
cctggtgacctggtgttggtgacgtacgacactcactaccgccaccacgtggtggtaaca
cttacacacacactacatttcctacataacgattcgatgaacgaactcgggttgaaacat
aacgagccatccaacaagacttggttgttatcgcgattcatcgaccgcgaatattgtcag
gctcgtaaacccaacaatcgtttcaaagttcccgtcggaacaaagttttaccgagttcga
ctttctaatgttaagaaataa
DBGET
integrated database retrieval system
