Ciona intestinalis (yellow sea squirt): 101242030
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Entry
101242030 CDS
T01056
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2A-like
KO
K05209
glutamate receptor ionotropic, NMDA 2A
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04080
Neuroactive ligand-receptor interaction
cin04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
101242030
04082 Neuroactive ligand signaling
101242030
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cin04040
]
101242030
Ion channels [BR:
cin04040
]
Ligand-gated channels
Glutamate (ionotropic)
101242030
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
101242030
NCBI-ProteinID:
XP_009859789
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Position
9:complement(3999394..4009122)
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AA seq
1147 aa
AA seq
DB search
MKGILVLALFMCYLGLVLGKMRLENCACNSTSLKQQFLIYPRIGAIVSTAKQKAVFEHYL
SMFNHNERAMNTYNQNTWMMKNLNPFKLDLSIVVVNETDPSELLQTICEEIVSQCVLYIM
WIPNTFADPLMSWLLPTLSRKVKLLTFTTDHLKLTPSFLPTKKRYLYQFTPSVDDTTNTM
LSMVGKYDWKQVTLLVTEAPGYDTFLTSWNSKKDQINCKTDIIGPMDVWTTPNDKIIQLL
DGIQSMIVVVYASLDELGILFQNLGKTNKKTVSRSWLVHEIGLMKRLYNEEQKLAYSLQS
HPDATFVTELPDYFPKPLSILVHFPTSNRGTQSILQAILPITKALAEKELQKNFGAFHYY
MKNNLWKHPYFINQVAQGISSYLKVGDPPKFNENGYLFDPSFTLLSTNSDNMLIESPPSL
IAAIKLNNVTLWRQLHTDPSFAYLSKDRHIRVVTLGEASIVTVDNSSSICSSISVQCYVT
DIETKHTFDAGDHNDSSFMNVWKPSCCKGFCIDLLQQLKKEIGFTYNIFVVRHGRHGKFT
KDGEWEGAVGDVVNGKADVAVGSITINKQREYVVDFSVPFMETGIGIMVNKFNGTVPPFA
FLGPYDCLSWACMLVVAMLASSIAVLTFEYFSPSGYNGDITINKNASRFTLGKSIWLHYG
IMVNNSVPIENPHSPSSRYMVSVWAFFCVIFLAMYTANLAAFMIQEESEDVITGLTDKRF
TNPTATNPPFRFGTVPNGSTELNMRTYYPLYHRYMEGYNMESLNDAVEALKTRKLDAFLY
DYAVLKYAAGKDKDCEMNVIRKPSFTSGYGVVFTKHSPWKEKFDIVLLNLMQNGYIERIS
NVWLTGLCGLPTKSRDFTSSRLDISNMAGLFIMLGGALALSILVFLFEHIFSRYVRRHLM
NCSPNCFFFIRTISRGIYNCLVGEDFKKMKARRIAVKCSQPVIWQDGRISTHSLLPRIFE
CENSTELVITSTIPRSTTCSHTSPVHHNRQKRPKEIVSETEKEILKKKVKPGTLLAAPTS
SKKVSYRKKTKPIVTSLAIPTEHSNYPIYNNTEAFRERHKPSHVYDQIQCNRTTPTCSRN
SDVCSCSQNLRSNSACSRHNNKKLKSKTPSPCRRLLTIPLSRSFGSLRDSLNSKPVCSRM
RSMDKLN
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtattctagttttagctctgttcatgtgctaccttggtttagtattaggaaaa
atgagattggagaactgtgcatgcaactctactagcttgaagcaacaatttctaatctac
ccaagaattggtgccattgtatccactgccaagcagaaagcagttttcgaacactactta
tcaatgttcaaccacaatgagcgtgcaatgaacacttataatcaaaatacttggatgatg
aaaaacctcaacccattcaaacttgatctttcaattgttgttgttaacgaaacagatcct
tcggagctgcttcaaaccatctgtgaggaaattgtgtcacaatgtgttctctatattatg
tggattccgaacacatttgctgatccattaatgtcatggttgctaccaacactatctaga
aaagtaaaacttctcaccttcactactgaccatttgaaactaactccatctttcttacca
acaaagaagagatacctctaccaatttactccatcagttgatgatacaacaaacacaatg
ttatcaatggttggaaaatatgactggaaacaagtgactctgttggtaactgaagcacca
ggatatgatacttttctgacttcctggaacagcaagaaagatcagataaattgtaaaact
gatattattggccctatggatgtgtggacaacacccaatgacaaaataattcaacttctt
gatggaattcaatctatgattgtggtggtgtatgcctcactggatgagctggggattttg
tttcaaaatttaggaaaaacaaacaaaaaaacagtttcaagatcatggctggtgcatgaa
attgggttgatgaaaagattatataacgaagaacagaaattggcatattcactccaatca
caccctgatgctacgtttgtaaccgaactacctgattactttccaaaacctttatcaatc
cttgtgcacttccctaccagcaacaggggaacccaaagcatattacaggctatcctacca
ataacaaaggccttagctgaaaaagagcttcagaaaaactttggggccttccattattac
atgaagaataatttatggaagcatccatacttcattaaccaggttgctcagggaatatct
agctatctcaaagtaggagatccacccaagtttaatgagaatggctacttattcgatcca
agttttactttgctttccacaaactcagacaatatgctcattgagagtccaccttcattg
atagctgctatcaaactaaacaacgtaactttatggcgtcaactacatactgacccctca
tttgcatacttaagcaaggaccgccacatcagagttgtaacattgggtgaagcttccata
gttactgtggataattctagctcaatttgctcttctatatctgttcagtgttatgttact
gatatagagaccaaacacacatttgatgctggagaccacaatgatagcagtttcatgaat
gtttggaaaccaagttgttgtaaaggtttttgcatagatttgctgcaacagcttaaaaaa
gaaatcggcttcacatacaacatatttgtggtccgtcatggccgccatggtaagttcacc
aaagatggtgaatgggaaggggcagtgggtgacgtggtgaatggtaaagctgatgtggct
gtcggttccatcactattaacaagcagagagaatatgttgtagatttctctgtacccttc
atggaaactggcatcggtattatggtgaataaatttaatggcaccgttcccccatttgca
ttcctaggtccatatgattgcttatcatgggcgtgtatgcttgtagttgctatgcttgca
tcttctatagcagtgcttacgtttgaatacttcagcccatcaggttacaatggagatata
acaatcaacaaaaatgcatctcgctttacacttggtaaatctatatggttgcattatgga
atcatggtgaacaactctgtccccattgaaaacccccactctccttcatcaaggtacatg
gtgtcagtgtgggcattcttctgtgtgatattcctagcaatgtacacggccaacctcgca
gctttcatgatacaagaagaaagtgaagatgtgatcacaggacttacagataaaaggttc
accaacccaactgctacaaacccaccattcagatttggaacggttccaaatggatccact
gagctaaatatgcgcacatactatccattataccacagatatatggaagggtataacatg
gaaagtttaaatgatgcagtggaagcacttaaaacaagaaaactggatgctttcttgtac
gactatgctgtgttaaagtatgcagcgggtaaagataaggattgtgagatgaatgtaatt
cgaaaaccctcgttcacatcaggttatggtgtcgtgttcacaaaacattcaccttggaaa
gaaaagttcgatatcgttcttttaaacttgatgcaaaacggttacattgaaagaatatca
aacgtctggcttactggcttgtgtgggcttccaactaagtcaagagacttcaccagctct
aggcttgatatttcaaatatggccggtttgtttattatgcttggaggtgccctggctctt
tcaattctagtttttttattcgaacatattttctcgcgttatgtaagaagacaccttatg
aactgctcaccaaattgttttttcttcattcggacaatcagcagaggcatctacaactgc
ttggtgggtgaagattttaagaaaatgaaggcaagaagaatagcagtcaagtgtagtcag
cctgttatttggcaagatggccgaatcagtacacactcgctgcttcctcgtattttcgag
tgtgagaattctacagagctggtaatcacatccactataccaagatccaccacttgctcc
catactagtcctgttcaccacaatagacagaaacgacccaaagaaatagtttcagaaaca
gaaaaggagattttgaaaaaaaaagttaaaccaggaactctattagctgctcctacctct
tccaaaaaagtcagttatcgtaaaaagacaaaaccgatagttaccagccttgcaattcca
acagaacattctaattatccaatctacaataataccgaagcttttcgtgagcgccataaa
ccaagccatgtatacgaccagattcaatgcaacaggacaaccccaacttgctcacgaaat
tctgatgtttgttcatgctcccaaaatctacgaagcaattcagcatgcagtcgacacaat
aacaaaaaactgaaatctaaaactccttctccctgcagacgtttacttacaatcccgctc
tctcggtcatttggttctctacgtgacagtcttaacagcaaaccagtttgttctcgtatg
agaagcatggataaactgaattag
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