Ciona intestinalis (yellow sea squirt): 101242956
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Entry
101242956 CDS
T01056
Name
(RefSeq) heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101242956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
101242956
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101242956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
101242956
NCBI-ProteinID:
XP_009859402
Ensembl:
ENSCING00000022958
ENSCING00000023775
LinkDB
All DBs
Position
8:complement(6183537..6192764)
Genome browser
AA seq
390 aa
AA seq
DB search
MSHNDSDEAGKIFVGGLSRQTTSEGFKQYFEGFGEVTDCVLMKDKETGVSRGFGFITFAN
PSSVNEVLKARPHTLDNKGIDPKPCTPKAVLQQKKATANSFTKSHKIFIGGISMEATQED
VKGYFERYGTVAEVVFVLNKEDPSKPHKGFGFVTFEDESSVDQAIAKHYHTIKDKRIEAK
KAESRERMDSMKGAGGQYGQNQGYGNNGYGGGNSGYGQGNQGGWMPDQNMMGNYGYGNQQ
GYPTSYPQQGYGNQPYGYGYGGYNGGNMGMQNQMMGGQGYPQQGGPMGAPPPTPDNMSGN
MGANGGYQQQGGMPRQASNNGGNAGPPNPPAASNMGGGYSQNASQYGAVRGGGDYNNAQS
NNPPPAGGSSNYSQKPAAGSGNTGYHPYRR
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcataatgattcagatgaagccggtaaaatattcgttggtggtttgtctcggcaa
acgacaagcgaggggttcaaacaatattttgaggggttcggggaagttaccgattgcgtt
ttaatgaaggacaaagaaacgggtgtttccagggggtttgggtttattactttcgccaat
ccatcgagtgtaaatgaagtgttgaaagcaaggcctcataccctggataataaagggatt
gacccaaagccatgcactcctaaagcagtgcttcaacagaagaaggcaaccgccaacagt
ttcacgaagtcacacaagatatttattggtgggatctccatggaagccacacaggaggat
gtaaaaggatattttgaaagatatggaacggtggctgaagtggttttcgtattaaacaag
gaggatcccagcaaaccacataaagggtttggtttcgtgacatttgaagacgaatcatcc
gtagaccaagctattgccaaacattaccataccatcaaagataaaagaattgaggcaaaa
aaagcggaaagtcgcgaacgaatggattcaatgaaaggagctggagggcaatatggacaa
aaccaagggtatggtaacaatggatatggtggtggaaactccgggtatgggcaaggtaac
caaggtggttggatgcctgaccaaaacatgatgggtaactatggatatggtaaccaacaa
ggctacccaaccagctacccacaacaaggatatggaaaccaaccttacggttacggctac
ggaggttacaatggcggaaacatgggaatgcaaaatcaaatgatgggtggacaaggttac
ccgcaacaaggggggccaatgggggcgccccctcctacccccgataatatgagtggtaat
atgggcgccaacggtggctaccaacagcaagggggtatgccaagacaagcttcaaataat
ggaggcaacgcaggccctcccaacccaccagcagcatcaaacatggggggaggttattca
caaaatgcttcacagtacggagctgtacgtgggggtggggattacaacaacgctcaatct
aacaaccctcctcctgctggaggatcatccaattactcacaaaaacccgcagctggctcc
ggcaacactggctaccatccttacaggagataa
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