Ciona intestinalis (yellow sea squirt): 101243197
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Entry
101243197 CDS
T01056
Name
(RefSeq) roundabout homolog 2-like isoform X2
KO
K06753
roundabout, axon guidance receptor 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
101243197
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cin04515
]
101243197
Cell adhesion molecules [BR:
cin04515
]
Immunoglobulin superfamily
ROBO family
101243197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
fn3
C2-set_2
Ig_5
C2-set_3
Ig_C17orf99
Ig_6
BiPBP_C
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_RIMBP2
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
101243197
NCBI-ProteinID:
XP_018673108
LinkDB
All DBs
Position
2:complement(3106513..3148473)
Genome browser
AA seq
1693 aa
AA seq
DB search
MNSCLQPGFKFVLVDLKLDGTRINSSTKEILNSIENSISNCLKSDNSLKMNIKKIVFVFC
IQIFIAGKTVFGLPDPDPSDNAPQPLPQPLARRSSGLNNKATPPRITEEPANAIVDDTEV
TVRLYCRATGFPDPTIRWLKDGQPLDSQSVRGIIKLAPGELMFLNVRHRGEDANTGTYQC
IAVNSAGEARSSNVTVQMASIGEDFVRNPDDMVAASGTKVTLVCEGPSGVPEPTITWRKE
MVPVSTNSRRQILNGNLVIQRAEKSDSGSYECVASNSAGERVSTAAILRIQAKPEFTLVP
TSQEAVSGQTVELECQVKGDPRPRIRWSKDGGSLPSQSRVVPLSNGNLRITSVQASDSGE
YVCTAENQVGSDSRSAIINVQVEPVFSRVSPDTTVEVGESVTLLCRASGNPLPTVFWRDL
NGNEMFLGRSYQDGHVQVTTDGDLIIRSIRFEDEGLYKCQALSGVGTITTKVQLTVQPRR
SGIPPPIIHRGPSNQTVGIGTTAILKCSSNSQPKPTLRWYKDGEPVQVGSDQIRKTLSAS
GDLQIYSAEKSDSGKYTCRAASDYGITSWDAKLSVLPSGSFVASVARNDDLPGQPGRPAV
VNTTSQTIAVRWQPNQYTGASPIQFSILEYYRIGSSSASWQRVTDVTGHVVVLRHLEPSS
DYVILVRSVNHQGASVPSQTSLHMRTKDIVQTRSPVQAGENQEKLNAVRVTLQRAVPNLL
PDSTSGAMQLSWQAMASCDDVDGFKIFAKPLSPRNRVTLKATTSCLMRTHQLQNLVSGIK
YELRIRPYKGQLTGFPSPIEFVSLQAGKIQPKKPTLSGVPDNDQKFITFTWTLPDDVLPP
YVTGYALNCYSSKGASYSETIKLNTSTYEWTLSALSTRSTYVASLTYLTPLGEGTTSDEY
TVAIGGGTTAQPDDEGGFVGMMQKQPGVIAGLAVGLIVVLAIIIGGVCYYRRSRRTNKGR
GLHVRSFSFTPQSGPHRVHRDRFDASNSQYSTGFQITAMGAPDTPSNSVTGDRGSTKGLG
MGTTTSSENSRAYLQRSAVNIGGPTNVTKNAVVSYNTGNGNMSGGLEMSPSPQPAFSYVT
DQLTSMNNIQPQFSSANLSRPSIASTQSNMSNNIQHRIQQQQLLRQRSSTSIGYTPPPNG
EPEQDFGYNDPTSPSVRSQGELPPPPPSPPLSQRTAISDRSRSSSGVHSTGERSSRSGQR
SRRGTRAARVPTASVAPVNHQSPVNHSNPQPYLPTDTDTGIGSLQQTPSPASRAEDMRHS
PTPPTPPVRGASAFSYGQGHPALQFDRNRDPSLNPGYLAGPSEGDSEAENDHVGQLRVRT
FSNEADPRNSMAVSGVSMMNAFGSESDDGDRSSERDSPVSALSDDDGSLQMESASQVGQN
LIRDESPIRPNPQPRIFKPIPTEVSPSRPYTQRFRSSEEEPLIENDNCLSPTKSKSGRKT
GSKPRRTNNKKNSAGNLARMNSASSSSSSYLHNTGDSGMSAGVGCSTEHSSLNSNSSASS
GASKSIGSKVGRSRTAGNLSSYDATPTNEGDGLVEVDFKRGVRVHDGNYSTPVSPTTSGV
SEQSGYVSTASSCWQFQQEPQSPTKHNTPRRPPRMGTGKRLAIASPQRPNDFADRSIKSP
GHYMKSPDRNTAYHDYDDVTPTRNALDDGNDQFHSGRGAFIVGKLGRELPQELSDVPEVS
TSDFCEDYSDQSQ
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgaactcgtgtctccaaccaggattcaagttcgttctcgtggatttaaaacttgatgga
acgagaattaactcgtctacaaaagaaattctaaactcaatagaaaattctatctcaaac
tgcttaaaaagtgataactctttaaaaatgaatattaagaagattgttttcgtcttctgc
atccagatatttattgccggtaaaacagtattcggattacctgatcccgacccatcagac
aacgcccctcagccattgccacaacccctggcccgtcgcagctccggtttaaacaataaa
gcgaccccaccacgaataacagaggagcctgccaatgccatcgttgatgatacggaagtc
actgtgcgactttactgccgagcaactggattccccgaccccaccataagatggctgaaa
gatggccagcctttggacagccaaagtgttcgcgggatcataaaacttgcacccggagaa
cttatgttcctaaatgtccgacatagaggcgaagatgccaatactgggacttatcaatgc
attgctgtgaatagtgccggagaagctcgaagctcaaacgtaactgtccagatggcaagc
atcggtgaagattttgttcgaaatccggatgacatggtcgcggcatccggtaccaaggtg
actcttgtctgtgagggtccttcaggagtcccagagcccaccatcacttggaggaaagag
atggtaccagtttcaacaaacagcaggcgacagattctcaatggaaatcttgtcatacaa
cgagccgagaagtcagattctggttcgtatgagtgcgttgcatcaaacagtgctggggaa
agagtaagcactgctgccatactgcgtattcaagctaaaccagagtttaccctcgtacca
actagccaggaagctgtttccggtcaaacggtggagctagagtgccaagtaaaaggagat
cctcgacccaggataagatggtcgaaagatggagggagtcttccatcacaaagcagagtc
gtgcctctaagtaacggtaacttacgaatcacttctgttcaagcaagcgacagtggggag
tatgtgtgcactgccgagaaccaagtcggttccgattcaagatcagcgataatcaacgta
caagttgaaccagtgtttagccgcgtgtcgcccgacaccactgtcgaagttggcgaatca
gtcactctgctgtgccgagcatcgggcaatccacttcccaccgtgttctggagagatcta
aacggaaatgaaatgtttcttgggcgatcgtaccaggacggccacgtgcaagtgacgacg
gacggtgacctaataattcgcagtatcaggttcgaagacgaaggcctttacaagtgccag
gctctcagtggtgttggaacgattacaacgaaagttcaattaactgtacaacctcgacga
agtggcattcccccaccaattatacatagaggccccagcaaccaaactgtgggcattggt
accactgcaatattgaagtgttcttcaaatagccaacccaagcctacactacgttggtac
aaagatggagaaccggttcaagtcggttcagaccagatacgcaaaaccttaagcgcgtca
ggagaccttcaaatctatagtgccgagaaatcggacagtggcaaatacacatgcagagca
gctagcgattacggaataacgtcttgggatgctaaactttctgttctacccagtggaagt
tttgtggccagtgttgccagaaacgacgacctccctggccaacctggacgaccagcggtg
gtcaatacaacatctcaaaccatagcagtacgttggcaaccaaaccagtacactggtgct
tcaccaattcagttctccattctggaatattatagaatcggaagctcttctgcaagttgg
caacgagtgacagacgtcacaggtcacgtggtcgtcctgcgccatttggaaccatcgtct
gattacgtcatattagtgagatctgtcaatcaccagggtgctagcgtacctagtcaaact
tcacttcatatgagaactaaagatattgtgcaaacgcggtctcctgttcaagccggtgag
aatcaagaaaagttgaacgcagtgcgagtcaccctacaacgggcagtccccaatctcctg
cccgactccactagcggcgctatgcagctgtcctggcaagccatggcgagctgcgatgac
gtggatggctttaaaatcttcgccaagccactgtcaccccgtaatcgtgtcacattaaaa
gcgacaacctcctgtctaatgagaacccaccagcttcagaatttagtttccgggatcaag
tacgagcttcgcatacgtccctataagggtcaacttactggttttccaagccccattgag
tttgtttctctgcaagctgggaaaatccagccaaaaaagccgacgttatcgggtgtgccc
gacaacgaccaaaaattcataacttttacgtggacgttacctgatgatgttttaccgccc
tacgttactggttatgctttgaactgctactcgtccaaaggcgcgagttacagtgagacg
atcaaactaaatacatcaacgtacgagtggacgttgtccgcgttgtccacccgaagtaca
tacgttgccagtctcacgtatctcacacctcttggagagggaacgacaagcgacgagtat
actgtcgctatcggagggggaactacagctcaacccgacgacgaagggggttttgttgga
atgatgcaaaaacagccaggtgtgattgccggccttgcagttggtctgatcgtcgtgttg
gcaattattataggaggcgtgtgttattaccgtcgaagcagaagaactaataaaggcaga
ggtctgcacgttcgttccttcagctttacgcctcaatcaggcccccaccgagtccataga
gaccgtttcgacgcatcaaacagccaatacagcactggctttcaaattacagccatgggc
gctccagatacccccagtaacagcgtaactggtgacagaggatccaccaaaggcttgggc
atgggtacgacgaccagttcagaaaacagcagagcgtatttgcaaagaagtgcggttaac
attggtgggccaaccaatgttacgaagaacgctgtcgtctcctacaatactggaaacggg
aacatgagcgggggtttagaaatgagtccttcacctcagccagccttctcctacgtaact
gatcaactgacgagcatgaacaacattcaaccccagttctccagcgccaatctctcaagg
cccagcattgcttccacgcaatcaaacatgtccaacaatatccaacaccgaattcaacag
cagcaacttctccgccaacgcagtagtacaagtattggatacaccccaccccccaacggt
gaacctgaacaggattttgggtacaatgaccccaccagccccagtgttcgctctcaaggg
gaattacccccgcccccacctagccccccactttcacaaagaacagctataagcgataga
agccgaagcagcagcggtgttcattcaaccggtgaaaggtcatctcgatcgggtcaaagg
tcacggcgtggaactcgcgccgctcgagtaccaacagcatccgtggcccctgtcaatcat
caatcacctgtcaatcattcaaaccctcagccgtacttaccaactgatactgacactgga
atcggaagtttacagcagacaccttctccagctagcagagcagaagacatgcgccactcc
cctaccccacccactcctccagtcagaggagcctccgctttttcttacggacaaggtcac
ccagcgttgcaattcgaccgtaaccgcgacccttcactaaaccctggctacttggctgga
ccttctgaaggtgattccgaagctgagaacgaccatgttggacaacttagagttcggacg
ttcagcaatgaagctgatccaaggaacagcatggctgtttccggggtctcaatgatgaac
gcttttggttctgagtcggatgacggagacagatcatcggagcgagattcaccagtctct
gccctgtcagatgacgatggatcattgcagatggaatcagcatcacaggtcggacaaaat
ttaatccgagatgaatccccaatacggcccaaccctcagccgcgtatatttaaaccaatt
ccaacagaagtttcaccgagtcgaccttacacacagcgcttccgcagcagtgaagaagaa
ccgctcatagaaaatgataactgtttgtcgcccactaaaagcaaaagtggaagaaaaacc
ggatctaagccgcggagaacaaacaataaaaagaattctgccggaaacttggccagaatg
aacagcgcgagcagctcttcgtcgtcgtatcttcataacactggtgacagtggcatgagt
gcgggggtcggctgttctactgagcatagcagtcttaacagcaactccagtgcaagtagt
ggtgctagtaaatctattgggtcaaaagttggccgatcaagaactgctgggaacctttcg
tcttatgacgcaacacccacgaacgaaggcgacggactcgttgaagttgattttaaacgg
ggtgtccgagttcacgacggaaattattcaacaccggtgtcacccaccaccagcggcgtg
tcggagcagagcggctacgtcagcacggcttcaagctgttggcagttccagcaagaacct
caatcccccacaaaacacaacacacccagacgacctccaagaatgggaactggaaagcgg
ttggcgattgccagcccacagcgcccaaatgattttgccgatcgcagcatcaagtccccg
ggacactatatgaaaagccctgatcgaaacactgcctatcacgattacgatgatgtcact
cctacccggaacgctctggatgacggaaatgatcagtttcattcaggtcgaggtgcgttc
atcgtcggcaaattgggtcgagaattaccgcaggaattatccgatgttcccgaggtatcg
acgtcagatttttgcgaagattatagcgaccaaagtcaatag
DBGET
integrated database retrieval system
