Ciona intestinalis (yellow sea squirt): 101243232
Help
Entry
101243232 CDS
T01056
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
101243232
Membrane trafficking [BR:
cin04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
101243232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
LRR_EndoS
Ig_2
LRR_Zer-1
V-set
LRR_14
LRR_9
ig
LRR_RPS2
LRR_R13L1-DRL21
LapA_dom
Motif
Other DBs
NCBI-GeneID:
101243232
NCBI-ProteinID:
XP_026692794
LinkDB
All DBs
Position
12:1777342..1783219
Genome browser
AA seq
703 aa
AA seq
DB search
MLNWIGFVVVTSIAPVVTACFIGTSDQCSCDINRLEIRCSGLENTLDEVMLSLAAETRYI
VLRKNWVLDETTLRAEHIVGLRKLVGFDISHNRIDKIEPDTFSNLRMLEDVDISRNKIRV
LENNVFSGSLPSLRNINLSGNKIIIILDGTFNAASNLESLDLTENPVVFLGARSFEGLVN
LQYLTMSGFQVTEFPSKPLSSLVNLRRLELRNFPAITGIPDAAFSENSRLTSLTISDVPN
ISELGWGSNCLRNLSKLRHLTLRTCNLPVISAVSFENLKQLKQLDISNNPIGIIKSNDLS
ALLNLEELFLVSTALNEVQAGAFTRMVKLKHLNVANNRMTTIDRGAFPDDISSMRKLTIT
NNLWSCDCGILWIVTSSITIENNGVTCTSPPIYQGSNLTEVVARLTRYERCYICTIKDFP
SPNYTQVDVGGTVDLPCYATGTPLPTVTWYAPSGLVISSAFTSTPRILRHNLIGKHLFIR
DVTIADAGVYKCVAANGVGVDQKTLKLQVRVIDGRIIEKPTQFTMSGNITALRNEIVTKQ
SNVSACPSQSPVIMTVLIGALSAMSAIGLLLSFLLGVWGYSNEKKFKQLKKKLREANTSQ
KRKYNSEQTRPQSPLAASNGTGAIGPVLNQNSGYGCPRNLPTMSNYRTAPSILPEKPRHA
TMIGDRKVDFRNSISSGYGSFGNGTTPTKPAASNTGSVVRGMS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgctgaactggatcgggtttgtggttgtgacgagcatagctcctgttgtaacagcttgc
tttattggaacaagtgaccagtgttcatgtgacattaaccgtttagaaatccgctgctcc
ggactggaaaatacgcttgacgaggtcatgctaagcttggcggccgagacacgatatatt
gttctgagaaaaaactgggtgttggacgaaaccaccctccgcgccgaacatatcgtaggc
ctcaggaaactggtcggatttgacatttcgcacaaccgaattgataaaatcgaacccgac
acgttcagtaatctaagaatgttagaagatgtcgatataagcagaaacaaaattcgtgtt
ttggaaaataatgtcttttctggatccctcccaagtttaagaaatataaatctttctggc
aacaaaataattataattttggacggaacattcaacgctgcatctaatcttgagagcttg
gatcttaccgagaacccagttgttttccttggtgcaagatcatttgaaggtcttgtaaat
cttcaatatctcacaatgtccgggtttcaagtgacagagtttcccagcaaaccattgagc
agtttagttaatctgcgtcgactagaacttcgcaattttccagcaattactggaataccc
gatgctgcgtttagcgaaaactcacgtctgacgtcacttaccatttcggatgttccaaac
atttccgaactcggctgggggtcgaattgtctacggaatttatcaaaactacgtcacctt
acgcttcgaacttgtaacctaccggtgatttcagcagtttcatttgaaaatctaaaacaa
cttaaacaactcgacatttccaacaatccaatagggattataaaatccaatgacttatca
gcactcttaaacttggaggaactcttcttggtaagcactgccctaaacgaagtacaggct
ggagcttttactcgaatggtaaaactcaagcatctcaatgtggcaaataacaggatgaca
accatcgacagaggcgcttttccagatgacatttcatctatgcgtaaacttacaattaca
aacaatttgtggagctgtgattgcgggatactatggatcgtgacgtcatctatcacgatc
gaaaataacggagtgacatgtacttccccgccgatttatcaaggatcaaacttaacagag
gtggtggcgcgtctaacacgctacgaacgttgttacatctgcactataaaagatttccct
tcgcccaattacacccaggtggacgttggtggcacagtcgatctgccatgttacgctacg
gggactccccttccaacagttacgtggtatgcaccttcagggctcgtaatttcttctgcg
ttcacgtccacccctcgaatattacgtcacaatctcattggaaaacacctcttcatccgt
gacgtaactatagctgatgctggtgtttacaagtgtgtagcagctaacggagttggtgtc
gatcaaaagactttaaagcttcaagttcgagttattgatggaagaattattgaaaagccg
acacagtttacaatgagtggcaacataacagcgttacgaaacgaaatcgtcaccaaacaa
tcgaatgtttcagcctgcccgtctcagtcaccagtaatcatgactgtattgattggcgcg
ttaagcgcaatgtcagcaattggtttacttcttagcttcttgctgggtgtgtggggttac
agcaacgaaaaaaaatttaagcagctgaagaaaaagttaagagaggcgaacacaagccaa
aaacgtaaatacaactccgagcagacgagaccgcagtcacctttagcagcttcaaacggt
actggagctattggtcctgtcctgaatcaaaattcaggttatggatgtccgagaaattta
ccgacaatgagcaactaccgaacagcaccatcaatattgcctgagaaaccaaggcatgcc
actatgataggtgaccgcaaagtggatttccggaattctattagctctggatacggatct
tttggtaatggcacgacgccaactaaacctgcagcaagcaacaccggttctgtcgtcagg
ggaatgtcttag
DBGET
integrated database retrieval system
