Ciona intestinalis (yellow sea squirt): 101243326
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Entry
101243326 CDS
T01056
Name
(RefSeq) (E3-independent) E2 ubiquitin-conjugating enzyme-like isoform X3
KO
K10581
ubiquitin-conjugating enzyme E2 O [EC:
2.3.2.24
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101243326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
101243326
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.24 (E3-independent) E2 ubiquitin-conjugating enzyme
101243326
Ubiquitin system [BR:
cin04121
]
Ubiquitin-conjugating enzymes (E2)
Ubiquitin-conjugating enzymes
101243326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tSH3-B_UBE2O
SH3-B_UBE2O
SH3-A_UBE2O
DUF5543
Motif
Other DBs
NCBI-GeneID:
101243326
NCBI-ProteinID:
XP_018666761
LinkDB
All DBs
Position
3:3005352..3018280
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AA seq
702 aa
AA seq
DB search
MSEPNFYPEDIIIGKSSNGRVRYGLIEKTVDMESDDESDSDMDDYSDNELEPGHVRLTWY
PEGSEETVHESKIQLVDRSTLPRDVVHEMNGSQLGTVLDVDVHCDVAVVGTNKILKNIHC
KSLKRIYPLMDGDLVAYGPWVGHISSAVGLLVLRFSNGARGKINLQDDSCEQLDDLYPHA
SDDGSFFDSEFYPGQVLSGPAKCFRKMLWFPGVPPPNLKSKSRFKVILEQLELAAVHVKW
IQRAFSSPNEKKKDDKPTSPSDKSKPDPILSAELGAKTELTEYERKLCLSTNPAEPPPDV
IHGEHLKYLKTLQYFWTGNLVLGTRMQYQLTANDVEQINLQPNNDKKLKRTRRVFSTRKM
DRKMARMSDNASAVPPAKRRGDKKSSKAKETGNNQEDSEDEFSNTEDQNHDVNEFWEDAA
DVAGGDQEQRCEDLDKDEEEKDDIDKFCYSTDPLPNSFACQLGDFSLKFSVTGKEKQALN
VNLENPNCSPEILKALSEGLEAEISPIRRSKFYWRGGISSNKMVAKLLKLLRKLSLQMNL
LQDENIKYEYKVGENTVSGYMDNTGKQVELTFTGDSEQKTSDDGCESEVPNQGPSNETLN
NWDGNRFTSGPIAQRQAGPKVIFQPGQNVTVEVVCTHTTADIEWQDGTMSRGIPSTGVRQ
AHHVDDNDFCPGDFVYDEANSGDVHLYGLILSADNANRMAIV
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaaccaaacttttatcctgaagatattattattggaaagtcaagtaatgggaga
gtaagatacggtttgattgaaaagactgttgacatggagtctgatgacgagtctgactct
gacatggatgattacagtgataatgaactggaaccaggtcatgtgaggttgacttggtat
ccagaaggatcagaggaaaccgtgcacgaatcaaaaatacagttggttgatcgttcaact
ttaccaagagatgtagttcatgaaatgaatggaagccagctcggaacagtgcttgatgtg
gatgtacactgtgatgttgcagttgtgggaacaaacaaaatacttaagaatattcattgc
aagtcacttaaacgcatctatccattaatggatggagatttggtggcatatggaccttgg
gttggtcatatttcaagtgctgttggacttcttgttcttagattctcaaatggtgcaaga
gggaaaataaacttacaggacgacagttgtgaacagctggatgatctttacccacatgca
agtgatgatggatcattctttgattctgagttttaccctggtcaagtcttgtcaggaccc
gccaaatgttttcgtaaaatgttgtggttccctggtgttccaccacccaatttaaaatca
aaatctagatttaaagttattcttgaacagttagagttggctgcagtgcatgttaaatgg
atacaacgagctttttcatcgccaaacgaaaagaaaaaagatgacaaaccaacatcacca
agtgataaatcaaaacctgatccaattttatcagcggagctaggtgccaagacagagtta
acagaatatgaacgcaaactttgtctctcgaccaaccctgcagaacccccacctgatgta
atacatggggaacatcttaaatatttaaagacactacaatacttctggactggcaacctt
gtgttgggcacacgaatgcaatatcagctgacagcaaatgatgttgaacaaataaactta
caacccaataatgataaaaaacttaaacgaacaagacgtgtctttagtacaagaaaaatg
gacagaaaaatggcaagaatgtctgacaatgcatcagccgttcctccagcaaaaaggaga
ggagacaaaaagtcctcgaaagccaaagagacagggaataaccaggaagactcagaagat
gagttttccaacacagaggatcagaatcacgatgttaacgaattttgggaagacgcagcg
gatgttgcagggggggatcaggaacaaagatgtgaagatttagataaagatgaagaagag
aaagatgatattgacaagttctgttattcaaccgatcctcttcctaattcatttgcttgc
cagcttggagattttagcttaaagttttcagttactggcaaagaaaaacaagctttgaat
gtaaatcttgagaatcctaattgcagtccagaaatattgaaagcattgagtgaaggtctc
gaggccgaaatctctccaattagaagatccaaattttactggagagggggaatatccagt
aataagatggttgcaaaactgcttaaacttttacggaaactttcgctacaaatgaatttg
ttgcaagatgagaatatcaaatatgaatacaaagtaggagagaacacagtatcggggtac
atggacaacacaggaaagcaggtcgaacttacatttactggcgactcggaacaaaagaca
tcagatgatggttgtgaatcggaagttcctaaccagggaccatcaaatgaaacactgaat
aattgggacggtaatcggtttacgagcggccccattgctcaacgtcaagctggacctaaa
gtcatattccaacctggacaaaatgttactgtggaagtggtttgcacccataccaccgct
gacatcgagtggcaagatggtacaatgtcgcgaggtattccgtcaactggtgtccgacaa
gcccatcatgttgatgataacgatttctgcccgggagattttgtctatgatgaagcaaat
tctggtgatgtgcatttgtatggtttgattctgagtgctgataatgcaaatagaatggca
atagtgtaa
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