Ciona intestinalis (yellow sea squirt): 104265764
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Entry
104265764 CDS
T01056
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104265764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
104265764
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
RNases
104265764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
Motif
Other DBs
NCBI-GeneID:
104265764
NCBI-ProteinID:
XP_026690457
LinkDB
All DBs
Position
5:3535087..3544720
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AA seq
852 aa
AA seq
DB search
MLPSLGYFRGIACPEEAQKLKCKRPYCHFRHKKNATATTNKKEIPALNIDVVKKAISQLK
SGGDQQSKSFDNSHFKGSAAKSYAEEYESSDDVGYVPFSSENKSSEKGSVLRNAKGPSSN
VHKRYTSKSSTHTTKNKYTSFLSSKPTTDLEYDPMSNYNCKDIQGKTKATHSAFSNSDDD
DVLVISDDTLTAEDTSKPDSSSEEVLPCLEPGVKQPPSKIIDSSEEKKSDTALKSAKSET
KTAIVISDTSSEPNKTSSSKLKINSPTKVSAETIKKFVDRDEIAKLEQELNGINTYEECF
RIYQENETLDPDTTTSDEMDLSGSDAQVDSVTTEDEVGPPPSKFQSTLFRAQHRVALKGN
NEPVRPSSTPAPKRKNPFAKPPTLDRKLPFKDIYRSSTSSTTQQTAGKGVRRMAHAANPT
KTTNGSIPRPVITADRHSKVPTNIRQRYLSMFIDECLRICNNVSAEAYNMAQTEETRIKE
RSKTKSIYLSLAACTLKKLRTMTNSKSAITPPPTTNNDSNSTVVAFKGRNKRIAHGGLDL
PNIEAKKQKLTQAQKLKNLNQKESCKGGFEFEMRETTQLTGEELYERMCNYIMTEDQLRD
NGYPREAEIPGQCKFYNKTATPVPMDAKRKICQRCGKEFILSLISMRNGTECIHHWGRAY
STKVGSSWEKRYSCCQNTVGSEGCSVNEPGIYSLDCEMCYTMVGLELARVSVVDFTGKLV
YDTFVVPEGKILDYNTRWSGLHKSDFVGVKTTLRHVQAVFLSKFSSDSILIGHSLESDLV
ALRIIHNSVVDTSIVFPHRLGPPYKRALRNLMSEHLGIVIQNAGDEGHDCTEDAVACVKL
MNWKLNEDCKVK
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgttacctagcttaggttatttccgtggtattgcttgcccagaggaagcacaaaagttg
aaatgcaagcgaccgtattgccattttcgtcacaaaaagaatgcaacagccactaccaac
aaaaaggaaataccagcccttaatattgatgtcgtgaaaaaagcaatctcgcagcttaaa
tctgggggagatcaacaatcaaaaagttttgacaactcacattttaagggttctgctgct
aaatcatatgcagaagaatatgaatcatctgatgacgtggggtatgttccgttttccagt
gaaaataaatcaagtgaaaaaggaagtgtgttgcgtaatgctaaaggtccatcttctaat
gtccataaacgctacacctcaaaatctagtacccacaccaccaagaacaaatatacatca
tttttgtcgtccaaaccaactactgatcttgagtatgatccaatgtcaaattacaattgc
aaggatatccaggggaaaacaaaagcaacacattctgcattttctaattcagatgatgat
gatgtcttggtaatatctgatgatacattaactgcagaagatacttcaaagccagattca
agttcggaagaagtgctgccatgtttagaacctggtgtaaaacaaccaccaagcaagatc
atagattcttcggaagagaaaaaatcagacactgctttgaaatctgccaaatctgaaaca
aaaacagcaattgttatttctgatacatcttcagaaccaaataaaacgagttcctcaaaa
ttaaaaattaattcaccaacaaaagtttcagcggaaacaattaagaagtttgtggacaga
gatgaaattgccaagcttgaacaagaacttaatggaattaacacatacgaggaatgtttt
cgtatttatcaagaaaacgaaacattggatccagacacaactacaagtgatgagatggat
ctaagtggttcggatgcacaagttgacagtgtgaccacagaagatgaggtaggaccccct
ccttccaagtttcaatccacgctctttcgtgctcaacaccgtgtggcgctaaagggcaac
aatgaaccggtccgaccatccagtactccagctccaaagcgtaaaaatccttttgccaaa
ccaccaaccttagacaggaagcttccatttaaagacatttacaggtcttcaactagtagt
acaactcaacaaacagctgggaaaggtgtaaggagaatggctcatgccgctaacccaact
aaaacaaccaatggttcaatccctagacctgttataactgcagaccgccactcaaaggtg
ccaacaaacataaggcaacgatatctcagtatgtttattgatgaatgtcttcgtatttgc
aacaatgtatctgctgaagcttacaacatggcacaaaccgaagagacgagaattaaagag
cgcagcaaaaccaaatccatttacctcagcctagctgcctgtacgctcaaaaaactccga
actatgacaaattctaaaagtgccatcacaccaccccctacaaccaacaacgactcaaac
tcgactgtggttgcttttaaagggagaaataagagaatagctcatggggggttagacttg
ccaaacattgaggcgaagaaacagaagcttacccaagcacaaaagttaaagaatttgaat
cagaaagaaagttgcaaaggaggttttgagtttgaaatgagggagacaacgcagctgaca
ggtgaggagttatatgagaggatgtgtaactacataatgactgaagatcaactcagagat
aatggttaccctcgggaagcagaaattcccggccaatgcaagttctacaataaaacagct
acacctgtgcctatggatgcgaaaaggaaaatatgtcagcgctgtggtaaagagtttata
ttatcactaatatccatgcggaatggaactgaatgcattcaccattgggggagagcttat
tcaactaaagttggttcttcatgggaaaaaagatattcttgttgtcagaacactgtgggc
tccgagggttgttcagtaaatgagcccggtatatattcacttgattgtgagatgtgttat
acaatggtgggattggagcttgccagagtaagtgtggtggatttcacaggaaaacttgtt
tatgatacatttgtggttcctgaaggaaaaatactggattacaatacaaggtggagtggt
ttacataagtcagattttgtcggcgtaaaaacaacactgagacacgtgcaagctgttttt
ctaagcaagttttcatctgattcaattcttatcgggcacagtcttgaaagtgacttagtt
gctctaaggataatccataactcagttgtggatacatccatagtattcccgcatagatta
ggtccgccatataaacgtgccttgagaaatttaatgtcagaacacctgggtattgtgata
cagaatgcaggcgatgaaggtcacgattgcacagaagatgctgtcgcatgtgttaaactt
atgaactggaaactgaacgaagattgcaaagttaaatga
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