KEGG   Ciona intestinalis (yellow sea squirt): 104265764
Entry
104265764         CDS       T01056                                 
Name
(RefSeq) RNA exonuclease 1 homolog
  KO
K14570  RNA exonuclease [EC:3.1.-.-]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    104265764
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cin03009]
    104265764
Ribosome biogenesis [BR:cin03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    104265764
SSDB
Motif
Pfam: EloA-BP1
Other DBs
NCBI-GeneID: 104265764
NCBI-ProteinID: XP_026690457
LinkDB
Position
5:3535087..3544720
AA seq 852 aa
MLPSLGYFRGIACPEEAQKLKCKRPYCHFRHKKNATATTNKKEIPALNIDVVKKAISQLK
SGGDQQSKSFDNSHFKGSAAKSYAEEYESSDDVGYVPFSSENKSSEKGSVLRNAKGPSSN
VHKRYTSKSSTHTTKNKYTSFLSSKPTTDLEYDPMSNYNCKDIQGKTKATHSAFSNSDDD
DVLVISDDTLTAEDTSKPDSSSEEVLPCLEPGVKQPPSKIIDSSEEKKSDTALKSAKSET
KTAIVISDTSSEPNKTSSSKLKINSPTKVSAETIKKFVDRDEIAKLEQELNGINTYEECF
RIYQENETLDPDTTTSDEMDLSGSDAQVDSVTTEDEVGPPPSKFQSTLFRAQHRVALKGN
NEPVRPSSTPAPKRKNPFAKPPTLDRKLPFKDIYRSSTSSTTQQTAGKGVRRMAHAANPT
KTTNGSIPRPVITADRHSKVPTNIRQRYLSMFIDECLRICNNVSAEAYNMAQTEETRIKE
RSKTKSIYLSLAACTLKKLRTMTNSKSAITPPPTTNNDSNSTVVAFKGRNKRIAHGGLDL
PNIEAKKQKLTQAQKLKNLNQKESCKGGFEFEMRETTQLTGEELYERMCNYIMTEDQLRD
NGYPREAEIPGQCKFYNKTATPVPMDAKRKICQRCGKEFILSLISMRNGTECIHHWGRAY
STKVGSSWEKRYSCCQNTVGSEGCSVNEPGIYSLDCEMCYTMVGLELARVSVVDFTGKLV
YDTFVVPEGKILDYNTRWSGLHKSDFVGVKTTLRHVQAVFLSKFSSDSILIGHSLESDLV
ALRIIHNSVVDTSIVFPHRLGPPYKRALRNLMSEHLGIVIQNAGDEGHDCTEDAVACVKL
MNWKLNEDCKVK
NT seq 2559 nt   +upstreamnt  +downstreamnt
atgttacctagcttaggttatttccgtggtattgcttgcccagaggaagcacaaaagttg
aaatgcaagcgaccgtattgccattttcgtcacaaaaagaatgcaacagccactaccaac
aaaaaggaaataccagcccttaatattgatgtcgtgaaaaaagcaatctcgcagcttaaa
tctgggggagatcaacaatcaaaaagttttgacaactcacattttaagggttctgctgct
aaatcatatgcagaagaatatgaatcatctgatgacgtggggtatgttccgttttccagt
gaaaataaatcaagtgaaaaaggaagtgtgttgcgtaatgctaaaggtccatcttctaat
gtccataaacgctacacctcaaaatctagtacccacaccaccaagaacaaatatacatca
tttttgtcgtccaaaccaactactgatcttgagtatgatccaatgtcaaattacaattgc
aaggatatccaggggaaaacaaaagcaacacattctgcattttctaattcagatgatgat
gatgtcttggtaatatctgatgatacattaactgcagaagatacttcaaagccagattca
agttcggaagaagtgctgccatgtttagaacctggtgtaaaacaaccaccaagcaagatc
atagattcttcggaagagaaaaaatcagacactgctttgaaatctgccaaatctgaaaca
aaaacagcaattgttatttctgatacatcttcagaaccaaataaaacgagttcctcaaaa
ttaaaaattaattcaccaacaaaagtttcagcggaaacaattaagaagtttgtggacaga
gatgaaattgccaagcttgaacaagaacttaatggaattaacacatacgaggaatgtttt
cgtatttatcaagaaaacgaaacattggatccagacacaactacaagtgatgagatggat
ctaagtggttcggatgcacaagttgacagtgtgaccacagaagatgaggtaggaccccct
ccttccaagtttcaatccacgctctttcgtgctcaacaccgtgtggcgctaaagggcaac
aatgaaccggtccgaccatccagtactccagctccaaagcgtaaaaatccttttgccaaa
ccaccaaccttagacaggaagcttccatttaaagacatttacaggtcttcaactagtagt
acaactcaacaaacagctgggaaaggtgtaaggagaatggctcatgccgctaacccaact
aaaacaaccaatggttcaatccctagacctgttataactgcagaccgccactcaaaggtg
ccaacaaacataaggcaacgatatctcagtatgtttattgatgaatgtcttcgtatttgc
aacaatgtatctgctgaagcttacaacatggcacaaaccgaagagacgagaattaaagag
cgcagcaaaaccaaatccatttacctcagcctagctgcctgtacgctcaaaaaactccga
actatgacaaattctaaaagtgccatcacaccaccccctacaaccaacaacgactcaaac
tcgactgtggttgcttttaaagggagaaataagagaatagctcatggggggttagacttg
ccaaacattgaggcgaagaaacagaagcttacccaagcacaaaagttaaagaatttgaat
cagaaagaaagttgcaaaggaggttttgagtttgaaatgagggagacaacgcagctgaca
ggtgaggagttatatgagaggatgtgtaactacataatgactgaagatcaactcagagat
aatggttaccctcgggaagcagaaattcccggccaatgcaagttctacaataaaacagct
acacctgtgcctatggatgcgaaaaggaaaatatgtcagcgctgtggtaaagagtttata
ttatcactaatatccatgcggaatggaactgaatgcattcaccattgggggagagcttat
tcaactaaagttggttcttcatgggaaaaaagatattcttgttgtcagaacactgtgggc
tccgagggttgttcagtaaatgagcccggtatatattcacttgattgtgagatgtgttat
acaatggtgggattggagcttgccagagtaagtgtggtggatttcacaggaaaacttgtt
tatgatacatttgtggttcctgaaggaaaaatactggattacaatacaaggtggagtggt
ttacataagtcagattttgtcggcgtaaaaacaacactgagacacgtgcaagctgttttt
ctaagcaagttttcatctgattcaattcttatcgggcacagtcttgaaagtgacttagtt
gctctaaggataatccataactcagttgtggatacatccatagtattcccgcatagatta
ggtccgccatataaacgtgccttgagaaatttaatgtcagaacacctgggtattgtgata
cagaatgcaggcgatgaaggtcacgattgcacagaagatgctgtcgcatgtgttaaactt
atgaactggaaactgaacgaagattgcaaagttaaatga

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