KEGG   Ciona intestinalis (yellow sea squirt): 104265886
Entry
104265886         CDS       T01056                                 
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03082  ATP-dependent chromatin remodeling
cin03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    104265886
   03083 Polycomb repressive complex
    104265886
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cin03036]
    104265886
Chromosome and associated proteins [BR:cin03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     104265886
  Histone modification proteins
   HAT complexes
    HATB complex
     104265886
   HDAC complexes
    Sin3A-HDAC complex
     104265886
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     104265886
    PRC2.2
     104265886
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     104265886
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    104265886
  Chromatin remodeling factors
   NuRD complex
    104265886
   NuRF complex
    104265886
   NuRF complex (fruit fly)
    104265886
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML WD_LRWD1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_DCAF12 ANAPC4_WD40 WD40_RFWD3 Beta-prop_RIG_1st eIF2A Beta-prop_SPT8 Beta-prop_IFT122_1st NBCH_WD40 MIOS_WD40 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 104265886
NCBI-ProteinID: XP_018668415
UniProt: A0A1W3JEA6
LinkDB
Position
8:896569..899897
AA seq 431 aa
MGEKDGAYDDSVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTCQWLPDVTKPEGKD
YTVHRLILGTHTSDEQNHLIIASVQLPTDDAQFDASHYDSERGEFGGFGSVSGKIEIEIK
INHEGEVNRARFMPQNPCIIGTKTPSSDVLVFDYTKHPSKPDPCGDCNPDLRLRGHQKEG
YGLSWNPNLSGHLLSASDDHTICLWDVGATPREGRILDAQHIYTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSAACNKPSHVVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
DGPPELLFVHGGHTAKISDFSWNPNEPWVSCSVSEDNIMQVWQMAENIYNDEEQDTAGSS
TPAAELEQNAT
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgggagaaaaagacggagcgtatgatgattctgttgaagaacgtgtcatcaatgaagaa
tacaagatatggaagaaaaatacaccatttctgtatgatcttgtcatgacccatgcttta
gaatggcccagtcttacttgccaatggcttcctgatgtgaccaaacctgaggggaaagat
tacacagttcatcgtttgattctgggcacccatacttctgatgaacagaatcatttgatc
atcgcgagtgttcaacttccaactgacgatgctcagtttgacgcctcacattatgacagc
gagcgtggggagtttggcggctttggttctgtcagtggaaagattgaaattgaaattaaa
atcaaccatgagggagaagtaaacagggccaggttcatgcctcagaatccatgcatcatt
ggaacaaagactccatccagcgatgtgttggtgtttgactacacaaagcatcctagcaaa
ccagatccatgcggagactgcaatcctgatttgcgtctgcgtggtcaccagaaggaaggg
tatggcctttcttggaatccaaatctaagcggccatttgttaagtgcatctgatgatcat
accatttgtttatgggatgttggtgccacaccacgtgaagggagaattctggatgctcaa
catatttacacaggtcatacagctgtagttgaagacgtatcttggcatttattgcatgaa
agtttgttcggttcagttgctgatgaccaaaaattgatgatttgggatacacgttctgct
gcttgtaacaaaccaagtcatgttgttgatgcacacaccgctgaagtaaactgcctttcc
ttcaacccatacagtgagttcattctagcaacaggttctgccgacaaaacggttgctttg
tgggatttacggaacctcaaacttaagttacattcgtttgagtctcacaaagatgaaatt
ttccaggtacaatggtctccacataatgaaaccatcttggcttcaagtggaactgatcgg
aggttaaatgtctgggatctgagtaagatcggggaagagcagagtgctgaagatgcagaa
gatggtcctcctgaactccttttcgtacatggaggacacacagcaaagatttcagacttt
tcttggaatcccaacgagccttgggtgtcttgctctgtttctgaggataacattatgcaa
gtatggcagatggctgaaaacatctacaacgatgaagaacaagatacagccgggtcttct
actcccgctgcagagttagagcaaaatgctacctga

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