Ciona intestinalis (yellow sea squirt): 104265886
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Entry
104265886 CDS
T01056
Name
(RefSeq) histone-binding protein RBBP4
KO
K10752
histone-binding protein RBBP4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03082
ATP-dependent chromatin remodeling
cin03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104265886
03083 Polycomb repressive complex
104265886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cin03036
]
104265886
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
104265886
Histone modification proteins
HAT complexes
HATB complex
104265886
HDAC complexes
Sin3A-HDAC complex
104265886
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
104265886
PRC2.2
104265886
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
104265886
Heterochromatin formation proteins
Other heterochromatin formation proteins
104265886
Chromatin remodeling factors
NuRD complex
104265886
NuRF complex
104265886
NuRF complex (fruit fly)
104265886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR75_1st
Beta-prop_EML
WD_LRWD1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
ANAPC4_WD40
WD40_RFWD3
Beta-prop_RIG_1st
eIF2A
Beta-prop_SPT8
Beta-prop_IFT122_1st
NBCH_WD40
MIOS_WD40
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
104265886
NCBI-ProteinID:
XP_018668415
UniProt:
A0A1W3JEA6
LinkDB
All DBs
Position
8:896569..899897
Genome browser
AA seq
431 aa
AA seq
DB search
MGEKDGAYDDSVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTCQWLPDVTKPEGKD
YTVHRLILGTHTSDEQNHLIIASVQLPTDDAQFDASHYDSERGEFGGFGSVSGKIEIEIK
INHEGEVNRARFMPQNPCIIGTKTPSSDVLVFDYTKHPSKPDPCGDCNPDLRLRGHQKEG
YGLSWNPNLSGHLLSASDDHTICLWDVGATPREGRILDAQHIYTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSAACNKPSHVVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
DGPPELLFVHGGHTAKISDFSWNPNEPWVSCSVSEDNIMQVWQMAENIYNDEEQDTAGSS
TPAAELEQNAT
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaaagacggagcgtatgatgattctgttgaagaacgtgtcatcaatgaagaa
tacaagatatggaagaaaaatacaccatttctgtatgatcttgtcatgacccatgcttta
gaatggcccagtcttacttgccaatggcttcctgatgtgaccaaacctgaggggaaagat
tacacagttcatcgtttgattctgggcacccatacttctgatgaacagaatcatttgatc
atcgcgagtgttcaacttccaactgacgatgctcagtttgacgcctcacattatgacagc
gagcgtggggagtttggcggctttggttctgtcagtggaaagattgaaattgaaattaaa
atcaaccatgagggagaagtaaacagggccaggttcatgcctcagaatccatgcatcatt
ggaacaaagactccatccagcgatgtgttggtgtttgactacacaaagcatcctagcaaa
ccagatccatgcggagactgcaatcctgatttgcgtctgcgtggtcaccagaaggaaggg
tatggcctttcttggaatccaaatctaagcggccatttgttaagtgcatctgatgatcat
accatttgtttatgggatgttggtgccacaccacgtgaagggagaattctggatgctcaa
catatttacacaggtcatacagctgtagttgaagacgtatcttggcatttattgcatgaa
agtttgttcggttcagttgctgatgaccaaaaattgatgatttgggatacacgttctgct
gcttgtaacaaaccaagtcatgttgttgatgcacacaccgctgaagtaaactgcctttcc
ttcaacccatacagtgagttcattctagcaacaggttctgccgacaaaacggttgctttg
tgggatttacggaacctcaaacttaagttacattcgtttgagtctcacaaagatgaaatt
ttccaggtacaatggtctccacataatgaaaccatcttggcttcaagtggaactgatcgg
aggttaaatgtctgggatctgagtaagatcggggaagagcagagtgctgaagatgcagaa
gatggtcctcctgaactccttttcgtacatggaggacacacagcaaagatttcagacttt
tcttggaatcccaacgagccttgggtgtcttgctctgtttctgaggataacattatgcaa
gtatggcagatggctgaaaacatctacaacgatgaagaacaagatacagccgggtcttct
actcccgctgcagagttagagcaaaatgctacctga
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