Ciona intestinalis (yellow sea squirt): 104266154 Help Entry 104266154         CDS       T01056                                  Name (RefSeq) helicase SKI2W-like   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin03018   RNA degradation Brite KEGG Orthology (KO) [BR:cin00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     104266154  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cin03019]     104266154 Enzymes [BR:cin01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      104266154 Messenger RNA biogenesis [BR:cin03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      104266154   mRNA degradation factors    3'-5' decay     Ski complex      104266154 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk ATPase_2 Motif Other DBs NCBI-GeneID:  104266154 NCBI-ProteinID:  XP_009860034 LinkDB All DBs Position 10:complement(2558852..2563753) Genome browser AA seq 1235 aa AA seqDB search MVESEDFPQCGFNLLETSVCGELVVTKSNCNNDSLTCQSLLLPIADLPVLKSATQEVVET CLNLEELAIFHRRNTQTIWPKENDLSAVYSLEQCPPSSTLQVERNETTGEILGVFEEDIH SGINLTAKNACTMARAPGAPVDRTRGSSNNFPFWPGGMEEPNADELISVTKSEGEEIDFQ SDLLSCPAGFETGVTFEANQIGQEHKLNMSDIFDQYAFEELGSIPEPKVEVVPKEQSDKP LVNMENETVDKLLPSLNLKSTRSPSENIAMPGDKPLSEEKWAYKVDIDTSVTNFHQQVPV MARTWPFELDTFQKQAVLKLEDRKSVFVAAHTSAGKTVVAEYAIALSAKHMTRVIYTSPI KALSNQKFRDFKQTFSDVGLITGDVQINPDAFCLIMTTEILRSMLYNGSDTIRDLEWVIF DEVHYINDSERGVVWEEVLIMLPVHCNVVLLSATVPNTMEFANWIGRTKQKKIYVISTQK RPVPLTHYLYTGNSNKTNDQMFLIVDSNRKFDTAGYQKALTARTERSNKQQKTGAKVQRI TNPASDKGIWLSLLNRLCKLNQLPVVAFTFSRKRCDENAALLSSLDLTSTQEKSEIHIFV NKCVKKLKGSDQNLPQVQQMSEQLQHGIGVHHSGILPILKEVVEMLFARGLVKLLFATET FAMGVNMPARTVVFDSLRKHDGTKMRNLLAGEYIQMAGRAGRRGLDDVGNVIILCKGQVP EMAELQIMMLGRPTKLESQFRLTYGMILNLLRVEQLRVEEVMKRSFSEFGSRKNSKAREQ RVRELNVQMKRGEEMRELIETTDYEDYLNTCQELLRLRKSVYKQVLSSPSSTKLIHPGRI VVLSCSPYQQHLAVTLKVNTSRVEKYFTVMVLTEKEPPKTDINCWDPRYIMGQLLTVPVS TPCEKLLEITIDDILVITNKKLKIQSDRIFEDCKRREIPRFSSDLPDKATGIALQELLRI LQSKDCGQVDLRADLGVNEIDMVENILSMNSLIDLVTSAFQCVSSPLFNTQVHEVAAFVQ LKKELNDLKYLLSEKSLLLLPEFKQRKLVLKQLRYIDFGGAVQLKGRVACEISSHEIVLT EIIFENVFSTMEPAEIVALLSSVVFQQRVDMGDVTLTPNLKEGMNKIIEVAKSVGELQWA QGIQQPVEDFVKTLNFGLVEVVYEWAQGTSFKDITNLTLVQEGMVVRTIQRLYETCRDVR NAARVIGDPTLFEKMKTCSELIKRDIVFAASLYTQ NT seq 3708 nt NT seq  +upstreamnt  +downstreamnt atggtggaatcagaggatttcccacaatgtgggtttaacctgcttgaaacaagcgtttgt ggtgaactggttgttaccaagtcaaactgcaacaatgacagtcttacatgccagtcatta ctcttgcctattgctgacctcccagtgttgaaatctgcaactcaagaagtggttgaaaca tgcctcaatcttgaggagcttgcgatatttcacaggcgcaatactcaaacaatatggcca aaagagaatgatttaagtgctgtctattctttggagcaatgcccaccatccagtacacta caggtggaaagaaatgaaacaactggagaaattcttggtgtgtttgaagaggatattcac tctggtattaacctgacagcaaaaaacgcttgcacaatggcgcgcgctcctggtgcgcca gttgaccgtactagagggtcaagcaacaatttccctttttggcctgggggtatggaagag ccaaatgcagatgaattgatttcagttacaaaatcagaaggcgaagaaattgattttcag agtgatctgttatcatgccctgcggggtttgagacaggcgtcacatttgaagcgaatcaa attggacaagaacacaagttaaatatgtctgacatctttgatcaatatgcatttgaagaa ttgggttcaatacctgagccaaaggttgaagttgttcctaaagaacaaagtgacaaacca ttagttaatatggaaaatgaaaccgtcgacaagcttttaccatctcttaacctaaaatcc acacgtagtcctagtgaaaacattgctatgccaggagataagcccttaagtgaagaaaaa tgggcatataaagttgatatagatacctcagttaccaattttcaccaacaagtgcctgtt atggcaagaacatggccatttgaattagacacctttcaaaaacaagcggttttaaagctg gaagaccgtaaaagtgtgttcgttgccgctcatacatcagcaggcaaaacagtagtagcc gaatatgccattgctctgtctgcaaagcacatgacaagagtgatatacacaagtccgatc aaagcactgtcaaatcagaagtttcgtgattttaaacaaacttttagtgacgttggtttg ataacaggcgatgtgcaaattaaccctgatgcattttgcttgataatgacgacagaaatt ttaaggtctatgttgtataatggctctgatacaattagagacctggagtgggtcattttt gatgaggttcactacataaatgactctgaaagaggggtagtatgggaagaagtcctcatc atgctgcctgtgcattgcaatgttgttttgctcagtgctactgtaccaaacaccatggag tttgctaattggattgggcgcactaagcagaagaaaatctatgtcatcagcacgcaaaag cgaccggtgcctcttactcattacctttacacaggcaacagtaacaaaacaaatgatcag atgtttttgattgttgactcaaaccgaaaatttgacacagctggatatcaaaaagctcta actgcgaggactgaacggtcaaataaacagcaaaaaactggagcaaaagttcaacgaatc acgaaccctgcttctgacaaagggatctggctctctctacttaacaggctgtgtaagtta aaccaactcccagttgtggcttttacattttcaaggaagaggtgcgatgaaaatgcagct ttgctttcctctcttgatcttactagcactcaagaaaaaagtgagattcatatttttgtg aataagtgtgtgaaaaagttaaaagggagtgaccagaacctcccgcaagttcaacaaatg agtgaacagctacaacacggtattggtgttcaccacagtgggattctaccaatcttaaaa gaagtggttgaaatgctgtttgctcggggattggtaaagcttctttttgccaccgaaaca ttcgcaatgggtgttaacatgccggcaaggactgttgtatttgacagccttcgaaaacat gacggtacgaaaatgagaaatcttctggctggagagtatatacaaatggctggaagggca ggtagaagagggctggatgatgtcggaaatgtcattattctctgcaagggccaggttccg gagatggctgagctgcaaataatgatgcttggaagacctaccaagctggaatctcagttc cgcctcacttacgggatgatcctcaacctcctccgtgtagaacagctgagagtggaagaa gtgatgaaaagaagcttctccgagtttggttccagaaagaattcgaaagcccgagaacaa agagtacgagaactgaatgttcaaatgaagagaggtgaggagatgagggagttaattgaa accactgattatgaagattaccttaacacctgccaagaactcctcaggttaaggaagtcc gtgtacaagcaggttctatcaagcccatcttcaactaaactaatccaccctggacgaatt gtggtgctgtcatgctcaccttaccagcaacacctggccgtcactctcaaagtaaacacc tcacgggtagaaaagtattttactgtgatggtgctgacagaaaaggagccacccaagact gatataaactgctgggatccaaggtacataatgggccaactgctcactgtgcctgtgtct actccatgtgagaaattgcttgaaataaccattgatgatatactggttattacgaataaa aaacttaaaattcaatctgatcgtatttttgaagattgcaaaagaagggaaatacctcgg ttcagctcagatttaccggacaaagcaactggtatcgctcttcaagaacttttacgcatt cttcagtctaaagactgtggtcaagtggatctaagagctgatcttggtgtaaacgaaata gatatggtagaaaacattcttagcatgaattccttaatagatttagtaacctcagcattt caatgcgtttcctcccctttgtttaacacccaagtacacgaagttgctgcgtttgttcaa cttaagaaagaactgaacgatctaaagtatctactcagcgaaaaaagtctgcttctcctg ccagaattcaagcaaagaaagttagttctaaaacagttacgttacatcgattttggtgga gctgttcagttaaaaggccgagtcgcttgcgaaatttcgtctcatgaaatagttctcact gagatcatatttgaaaacgtcttctccaccatggaaccggctgagatcgtcgctcttcta tcttcagttgtcttccagcaaagagtcgacatgggcgatgtcactcttaccccaaactta aaggaaggcatgaacaaaattattgaagttgcaaaaagtgtaggcgagctgcagtgggcc caaggcatccagcagcctgtagaagattttgttaaaaccttaaacttcggacttgtagaa gttgtgtatgaatgggcacaaggcacttctttcaaagacatcacaaatttaactttggta caggaaggtatggtggtacgtactatacaaagactttacgaaacttgtcgggatgttcgt aacgctgcaagggtaatcggggaccccacattatttgagaaaatgaaaacctgttcagaa cttatcaagcgggacattgtatttgcagcgagcttgtacacgcaataa

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