Ciona intestinalis (yellow sea squirt): 104266487
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Entry
104266487 CDS
T01056
Name
(RefSeq) ATP-dependent DNA helicase PIF1-like
KO
K15255
ATP-dependent DNA helicase PIF1 [EC:
5.6.2.3
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cin03032
]
104266487
03029 Mitochondrial biogenesis [BR:
cin03029
]
104266487
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104266487
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
104266487
Mitochondrial biogenesis [BR:
cin03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA maintenance factors
104266487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIF1
AAA_30
Pif1_2B_dom
AAA_19
DEAD
AAA_22
UvrD_C_2
Herpes_Helicase
Mg_chelatase
ABC_tran
PhoH
RNA_pol_A_bac
AAA_7
AAA_16
AAA
AAA_29
Motif
Other DBs
NCBI-GeneID:
104266487
NCBI-ProteinID:
XP_009861135
LinkDB
All DBs
Position
Unknown
AA seq
616 aa
AA seq
DB search
MSENTSITCNICVESISGSKNVVKRETIKNGNLTLWRNEQKEIVLLLTRSKKETKFVLYD
IQIHCKFMKEGKGSITLTNHNVSFLLSNCPPKNLRQFFKVLSVKMTRFKQQHNKITDRKK
LLMTSQINEISPLNEGDIASVNKMRQTIATSKLADGINRKRKLELTTNNQTMKNAGPPPK
KTMLTLKTENLNSDQKKVINLVKQGRNLFFTGSAGTGKSFLLRHIVGILPPGQTAVTAST
GVAACHIGGVTLHSFAGIGSGSASIENCIQLAKSRPAVVKQWKACRHLIIDEISMISGDF
FDKIEAVARAVRGSMDPFGGIQLILCGDFFQLPPVSKGKETVKLCFQSKSWQPCVDVCWE
LKHVYRQTDTKFIQMLQDIRIGRCTAKIEEVLKATKLNKTENNGILATQLCTHKENVQLC
NKNQLEKLPSDPIVYEAQDSTTAFTDIIDKMLPDTKIITLKKGAQVMLNKNLNVGKGMVN
GARGIVTGFTKSEQPLPIVRFLNGDEHTIKLECWTVKVVCDLIVVRKQIPLKLAWAISIH
KSQGMSLDCVEMSLSRVFECGQAYVALSRARNLEGLRVLDFQASCVRSNVHVLRFYRRIR
QEQHAIYYNVTTGIAE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaatacaagtattacatgcaatatttgtgttgaaagtataagtggtagcaaa
aatgtggtaaaacgagaaacgatcaaaaatggaaacctcacgttatggagaaatgaacaa
aaagaaattgtgttgctccttacacgttcaaagaaagaaacgaagtttgtgctgtatgat
attcaaattcactgcaagtttatgaaggaaggaaaaggatccattactcttacaaatcat
aatgttagtttccttttatcaaattgtccaccaaaaaacttgcgacaattctttaaagtt
ttgtccgtaaagatgactcgttttaagcagcaacacaacaagatcactgacaggaagaag
ttgcttatgacatcacaaataaatgagataagtccattaaatgagggagatattgcctca
gtgaacaaaatgcgacaaaccattgctacatctaaacttgcagatggaataaaccgtaag
aggaaactagaattaacaacgaacaatcagaccatgaaaaatgcaggaccacctcctaaa
aagacaatgttgactttaaagacagaaaatcttaacagtgatcagaaaaaggttataaac
cttgtcaagcaaggtagaaatcttttctttacaggaagtgctggaactggaaaatcattt
ctacttcgccacattgtaggtatattaccaccaggacaaacagcagtcacagcaagcact
ggtgttgcagcatgtcacataggtggggtgacccttcactcatttgctggtatagggagt
ggtagtgcttctattgaaaactgcattcaattagcaaaaagcagacctgctgttgtaaag
cagtggaaagcatgtcgacatttgattattgatgaaatatcaatgatcagtggtgacttc
ttcgataaaattgaagcagttgcgagagctgtccgaggatcaatggacccatttggtgga
attcaattgattttatgtggagacttttttcaactacctccagtgtcaaaaggaaaggaa
acggtcaaactttgttttcaaagtaaatcttggcaaccttgtgtggatgtttgttgggag
ttaaaacatgtatatcggcagacagacacaaagtttattcaaatgcttcaggatattcga
attggaagatgtactgcaaaaattgaagaggtattgaaagcaacaaaactgaacaaaaca
gaaaacaatggaattttagcgacacaactttgtacacataaggaaaatgtgcagttatgt
aataaaaatcaactggaaaaactgccaagtgacccaattgtgtacgaagcccaagatagt
acaactgctttcacagatattatagataagatgctgcctgatactaagataataacacta
aagaaaggagctcaagttatgctgaataaaaacttaaacgttggtaaagggatggttaac
ggtgcgaggggaattgtaacaggatttacaaaatcagaacaaccattgccaattgttcga
tttctaaatggtgatgaacatactattaagttagaatgctggactgtaaaagttgtgtgt
gatctaattgtagttcgtaagcaaattcctttaaagcttgcttgggcaatttcaatccac
aaaagtcaaggaatgtcattagattgtgttgagatgtcattatctcgtgtgtttgaatgt
ggccaagcttatgttgcactatcaagagccagaaacctggaagggctgcgggttttagat
tttcaagcttcctgtgtgagatccaatgttcatgttctcaggttttatcgcagaattcga
caggaacagcatgctatatactataatgtcacaaccggtatcgcagagtaa
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