Ciona intestinalis (yellow sea squirt): 108949967
Help
Entry
108949967 CDS
T01056
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
cin04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108949967
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108949967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
108949967
04121 Ubiquitin system [BR:
cin04121
]
108949967
03400 DNA repair and recombination proteins [BR:
cin03400
]
108949967
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108949967
Spliceosome [BR:
cin03041
]
Complex B
Other components
Prp19 complex
108949967
Complex C
Prp19-CDC5 complex
108949967
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
U-box type E3
108949967
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
108949967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Prp19
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
WDR55
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR41
PEP5_VPS11_N
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_ACSF4
Beta-prop_RIG_2nd
eIF2A
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
RMC1_N
Beta-prop_VPS8
tRNA_edit
U-box
PROPPIN
Cytochrom_D1
PAS_11
Motif
Other DBs
NCBI-GeneID:
108949967
NCBI-ProteinID:
XP_018669790
LinkDB
All DBs
Position
12:<4632298..4638961
Genome browser
AA seq
504 aa
AA seq
DB search
FNPIFVKLVSGEVPEVPCISPVSGCVFEKRLLEKFVFEHGTDPVSNEPLSMEQVVEMKTN
PLVKPKPPSATSIPAILKSLQDEWDACMLTSFTLRQQLHTTRQELSHALYQHDAACRVIA
RLTKEATAAREALATLKPTSGVQQTNQHQPAAMQVDKQQDDGEPIGLTEDVIQKLQDKAS
VLTSERKKRGKRMPEDLASADDIRSYRPIASHPGLHSASVPGILCLDLCSSDTNRVITGG
ADKTAVVFDKENEQVITTLKGHTKKVTHVLYHPVEDVVFTSSPDSTIRIWSVQNGDCSSI
IRTHKEAVTGISLHALGDYLLSCSEDQHWAFSDVRTGQTLCRVTDDAISSALTCAQFHPD
GLIFGTGTVDSQIKIWDLKERTNVANFPGHSGPVTAISFSENGYYLATAADDASVKLWDL
RKLKNFKTLSMADNYEVKSLTFDQSGSYLAVAGTDMRVYLCKQWVELKSFTEHSALTTGV
RFGKNAKFLASSGMDRSLKFYGVQ
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
tttaacccaatatttgttaaattagtttccggtgaagttcctgaagtgccatgtatatcc
ccagtctcaggttgtgtcttcgagaaacgtttgttggagaaatttgtttttgagcacggt
acggaccccgttagtaacgaacctttgtccatggaacaagtcgtggaaatgaagaccaat
ccattagtgaaacctaaaccaccatcagcaacaagcatccctgctattcttaaatccctt
caagatgaatgggacgcttgtatgttgacaagtttcaccctgagacaacaactgcacact
acaagacaagagttgtcacacgcattgtaccagcatgacgccgcatgtcgagtcatcgct
cgcttgaccaaggaggccacagctgcccgtgaagcgcttgctacgttaaaaccgacatct
ggggtccaacaaaccaatcaacatcaacctgctgccatgcaagtggataaacaacaagat
gatggtgaacccatcggactgacggaggatgtgatacagaaactccaggataaagcgagt
gtcctcacttctgagaggaagaagagagggaagcgaatgccggaggatctcgcttctgct
gatgacatcaggagttatcgacctattgcaagccaccctggtttacattcggcttcagtt
cccgggatattatgtcttgatctttgttcatcggatactaacagggttataactggagga
gcagataagacagctgttgtgttcgacaaagagaacgaacaagtgatcacaacattgaag
ggacatacaaagaaagtcacccatgtattgtaccaccctgttgaggacgttgtcttcaca
tcatcaccagattctacaattcgtatctggtcggttcaaaacggggattgttcatccatt
attaggacacataaggaggccgttacaggcatcagtttgcacgcacttggtgattacttg
ttgagttgcagtgaggaccaacactgggcattcagcgatgttagaacgggtcaaacactt
tgtagagtgactgacgatgccattagcagcgcattgacgtgtgcacaattccaccccgat
ggattgatcttcggaacaggaaccgtggacagtcagatcaagatttgggatttaaaggaa
agaacaaacgttgccaactttcctggtcactcaggaccggtcacagcgatctcgttctcc
gagaatggatattacctcgctactgctgctgatgatgcttcagttaaactatgggattta
aggaaacttaaaaacttcaagactttgagcatggctgataattatgaggttaaatcgttg
acgttcgatcaatctggttcatacttggcagtagcaggaaccgacatgcgtgtttacctt
tgcaagcaatgggtggagttaaagtcattcaccgagcattcagctttaactacaggagtt
cgttttggaaagaacgcaaaattcctcgcctcgtctggcatggatcgttcgctaaagttc
tatggggttcagtga
DBGET
integrated database retrieval system
