Ciona intestinalis (yellow sea squirt): 108950257
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Entry
108950257 CDS
T01056
Name
(RefSeq) leucine-rich repeat-containing protein 4C-like isoform X1
KO
K07523
netrin-G1 ligand
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cin04515
]
108950257
Cell adhesion molecules [BR:
cin04515
]
Immunoglobulin superfamily
NGL family
108950257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
LRR_1
V-set
ig
LRR_14
LRR_9
Ig_3
I-set
LRR_LRWD1
LRRNT
LRR_EndoS
Ig_2
Herpes_gE_N
Syndecan
Ig_6
Motif
Other DBs
NCBI-GeneID:
108950257
NCBI-ProteinID:
XP_018671043
Ensembl:
ENSCING00000000516
LinkDB
All DBs
Position
Unknown
AA seq
884 aa
AA seq
DB search
MVENRLRNISSSGNRSGHKQPLTGGRASSNDWSKTRESKKKGKFGKNERGRVMTSRLLMM
ASAVWWCYNLDNCVKVNAVDQICPPDCDCYDEFKEVYCEARALRSIPSEIPFSVNSLSLG
NNNIRELQRNSFRQIPGLETLRLNGNHIRDIPRNAFYGLKKLRRLDLSTNRLTHIPTEAM
AQLVSIQEISLRGNPITEIVGYEFIQIRATLRSLDVGELRHLKYLSNQALAGLDNLQALS
MDSCGLNDMPTVRPLTNIRTLNLANNRISILDSNSLKGLRKLSNFHMEYGALATVANDAF
NDLVSLEILNLSGNNLTSLPSTVFRYTTRLTSLKLQRNPWLCNCDLLPLAGFLSDSTACT
DGLCGTCRYPPTYRGLPLANLTRINNPPCAALIIGEQTSPSLNVSVGDSVRIPCPTLPPN
HRTSKERIKWKTPNGTSIRHGQYKVRITMLGNGSLNFTKVTLKDKGLYTCSVSKSGNEVA
KSTVFLNVTSQTNVLTPSYFATETSVSKATRNNVQYQNPRPTQPAYVPKPTTAQNSVAVQ
WKPTTRKSNSFVPILSKPESPASTTPYYKQKEIQQDSMNEVMRTTKIIIGCFVGLTLVAA
IILLAFYKLRKKNFSQRREPYGENESSGRGGPRTNCAEANLIDRQLTNNVACQRIEEPMN
HINNSTPIMTSPTESMWMMTSQSNNNQNITLPQTAVHVLPPPPEEMFPHNNTTISSMTSQ
NTSVTSSLCYPTLRKKPTATPSVPSKQLLSSLATSCRQVALERRSDGYKLGSEIKGPHKS
CNDLKRAYDGFPPLQDDVSRMSDIDFATAGRTNIKPTGHAQVRSQCCATTEKNPNKDAKS
GSTAGPQRNRDIIHKVGSVNHRPDQPCVACLRNYGVKGTRLTEN
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggtggagaatagattgcggaatatttcatctagcgggaataggtcgggacacaagcaa
ccgctgacaggcggtagagcgagcagtaatgattggagtaaaacaagagagtcgaagaaa
aaaggaaagtttggtaaaaacgagagagggagggtgatgacttcgagacttctgatgatg
gcttctgcggtgtggtggtgttataatcttgataattgtgtgaaagtgaacgctgtggat
cagatatgtccaccagattgtgactgctatgatgaattcaaggaggtttactgtgaagcg
agggcactgagatctataccgtcagaaatcccgttctccgtaaactctctcagtcttggt
aacaacaatatacgggaattacaaagaaattcatttcgtcaaatacctggacttgagact
ttacgtttgaatggaaaccatatacgagacatcccaagaaacgccttctatggtttgaaa
aagctaagaagacttgatttgtccacgaaccgcctaacccacataccaaccgaggctatg
gctcagttagtaagcatacaggagatatcgttaagagggaaccctatcactgagatcgtg
gggtatgagttcatacaaatacgagcaacattacgtagtttagatgttggcgaactgaga
catttgaaatatttatcgaatcaagcgttggcaggattggacaatcttcaggctctaagc
atggactcgtgtggtttaaacgacatgccgactgtgcgaccactaaccaacatacgaacc
ctcaaccttgctaacaaccgaatatccatattggattcaaactcattaaaagggctgcga
aagttgtccaacttccacatggaatacggggcgcttgcaactgttgcaaatgatgcattc
aacgatctagtttcgttggagattttaaatttatccggaaacaatctgacgtcacttccg
tctaccgtgttccgttatacaacgagattgacgtcgttaaagttgcaacgaaacccatgg
ttatgtaattgtgacctattacctttggcagggtttctatcagacagcaccgcatgcact
gacgggttgtgtggaacttgcagatacccgcccacttatcggggcttaccacttgctaac
ctcacacgtattaataacccaccatgtgctgctctaattattggggaacaaacaagtcca
agcctgaacgtgtctgtcggcgacagcgttcgtatcccatgtcccactttacccccaaac
caccgaaccagcaaggagagaatcaaatggaaaacaccaaacggaacttcaataagacac
ggccaatacaaagtcagaatcacgatgcttggaaacggttctctcaactttacaaaagtg
actttaaaagacaaaggtctatacacatgctctgtgtcaaagtctggtaacgaggtggcc
aagtctactgtgttcttgaatgttacaagtcaaaccaatgtcttaacaccttcatacttt
gctactgaaacaagtgtaagcaaagctacaaggaataatgttcaatatcaaaacccacgt
ccaacacaaccagcttatgtaccaaaaccaactacagcacaaaacagcgttgctgtgcaa
tggaaaccaaccacaagaaaatcaaactctttcgttcccattttatccaaacctgaatca
cctgctagtacaacaccttattataaacagaaggaaatccaacaagactccatgaatgaa
gtaatgcgaacgaccaagatcatcattggttgttttgttggcttaacattagttgctgcc
atcatacttcttgcattctacaaactaagaaagaagaatttctcccaacgcagggaacct
tatggtgagaatgaaagcagtgggcgtggcgggccaagaaccaattgcgcggaagcaaac
ttgattgacaggcaattaaccaataacgttgcttgtcaaagaatagaagaaccaatgaac
catatcaataactcaactcccattatgacatcaccaacagaatcaatgtggatgatgaca
tcacaatcaaacaacaatcaaaacatcaccctcccccaaacagcggtccatgtcctccct
ccaccacccgaggaaatgtttcctcacaataatacaacaatatcatctatgacatcacag
aacacatcggtgacatcatcgctctgttaccccaccttgaggaagaagccaacagcgaca
cccagtgtcccgtcaaagcaacttctaagcagcttagcgacttcttgtcgccaggtggcg
ttagagcgccgatcggacggttacaaactggggagtgaaattaaagggccgcataaatcg
tgcaacgacttgaaacgagcgtatgacggctttccaccactacaggatgatgtttcacgc
atgagtgatattgacttcgcaacagcaggcagaacgaacattaagccgactgggcacgct
caagtcaggtcgcagtgttgcgcaaccacagagaaaaatcccaataaagatgcgaagtct
ggaagcactgctggaccacaaagaaaccgagatataattcacaaagttggttcagtaaac
catcgtcccgaccagccatgcgtggcatgtttgcgcaactatggagttaaaggcacgcgc
ctcactgagaattga
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