Ciona intestinalis (yellow sea squirt): 108950317
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Entry
108950317 CDS
T01056
Name
(RefSeq) general transcription factor 3C polypeptide 2-like isoform X1
KO
K15200
general transcription factor 3C polypeptide 2
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
108950317
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIC
108950317
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
WD40
WDR55
Beta-prop_WDR5
DSE1_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_VPS8
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_NOL10_N
MIOS_WD40
DUF8421
WD_LRWD1
Lgl_C
Beta-prop_WDR3_2nd
zf-C2H2_ZNF462_11
Motif
Other DBs
NCBI-GeneID:
108950317
NCBI-ProteinID:
XP_018671315
LinkDB
All DBs
Position
Unknown
AA seq
813 aa
AA seq
DB search
MPSRRKNTAPQRLPALQDEEIEEAWPTDPALLAQYITEHPLTEFYSAPSLPKFFMEQLQD
AKKTSKEEGIEIYHCKACNNKKYKTLSGLRYHVQQSCDQVPRRAYTCLLCTFQHQEERNI
EYHIQEHHVEKYLPPKNDEKYQRRASKLGRMKVLLYEESSSAADVIDKEAGSEYEEEETV
EEETVEEFEGEEEDEILSNIKVKTATKSTRTPRKSRRKVTPKISRLTYTTLGKPLSNAFG
WTYSKRRMLEKKFPHVFPNWTAQFTLGDLDTTEDISNFGLRKTSPAFAIDRNTLNKISAP
KNSNDSSLEFKKLNCFASVVNDGIQSATMFTGGPVWSMAWCPFPCDVTSHQYLALSTNIG
EHYMDPKFTYKDRAMIQIWDCGEMPLKLKKKTSMTHPCFSLGLTLDVGPIWDMKWCPYGG
HVSSTLTGGRLGLLAVACASGDVYIISIPHLQGRDQILNGNTVNGNTGKHPIFKTRPVIK
LCPVRGESRPFGQTFSLTWSTNDGCGFVAAGFASGHVAVWDLRSASSLLLGEVDEYTKVL
YACHSFRAHNKPLRGIVWCPFDSNILVTGGNDRMLKLWDRRRTDAPLHENNVTKCSFTSE
MEWPINYNGIYTATNNAFSIPHFHSCLYVKLNVQSDALPPINNVFPNKATSWTVTSSDWL
NCVGGGDVTGLAMIHISNNWNRGNIYVKKVSRMLLFQCDVIDDEVTSQEVTDNESKDGED
YKLVFRDADTNTDLSKANKLESYKRLRTYDCFKDDNFKPNYPAILKMRWNPNITSYTSIA
TATNSGLVRIQTVEGLVSKEVETAQQEAISQDV
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgccatctagaaggaagaataccgctcctcaaagattgccagcattacaagatgaggaa
attgaagaggcgtggccgactgaccccgcccttcttgcacaatacataacagagcacccg
cttaccgagttttactctgccccatctttgcccaagtttttcatggagcagctccaggat
gctaaaaagacctcaaaagaggaaggcattgagatataccattgcaaagcttgtaataat
aagaagtataaaactttaagtggtttacgataccacgtgcagcaaagttgtgaccaagta
ccaaggagagcttatacttgtttgttatgcacctttcaacatcaggaagaaaggaatatt
gaatatcatatacaagaacatcatgttgaaaaataccttccaccaaaaaacgatgagaaa
tatcagcgtcgagcttcaaaacttggtcggatgaaggtcctcctgtacgaagagagcagc
tcggcagctgacgtcatcgataaggaggcgggatctgagtacgaagaggaggagactgtg
gaagaggagacagtagaggaatttgagggggaagaggaagacgagatcttgagtaatatc
aaggtcaagacagcaacaaagtccacaagaactccaaggaaatcaaggagaaaagtcacg
ccaaagattagcagattgacgtacacaacgcttggtaaacctttgagtaacgcgttcggt
tggacgtattcaaaacgacggatgcttgaaaaaaagttcccacatgtgtttcccaactgg
acagcacaatttactttgggggatttggacacgactgaagatataagcaactttgggttg
cgtaagacttcacctgcatttgcaatcgaccgaaatactttaaacaaaatttccgctcca
aaaaattctaacgattcaagtttagaatttaaaaaactaaactgttttgcgtctgtggtg
aatgacggaatacaaagtgccacaatgttcactggtggtccagtatggagcatggcttgg
tgtcctttcccatgtgatgtcacatcccatcagtaccttgccttgagcacaaacattggt
gaacattatatggacccaaagttcacatacaaagatagagctatgattcagatttgggac
tgtggagaaatgccattgaaattgaaaaagaagacttccatgacacatccatgtttttcc
cttggattgacactggatgtggggccaatatgggacatgaaatggtgtccttatggtggc
cacgtgtcatctactctaacaggtggtagattgggtttattagcagtggcgtgcgcttct
ggagatgtttatattatttctatccctcacctgcaaggacgagatcaaatattgaatggc
aacactgtgaatgggaacactggaaagcatccaatatttaaaacacgacctgttatcaag
ttatgtccggtacggggcgaatctcggccgttcggacaaacattttccctcacgtggtcg
actaacgatgggtgtggattcgttgctgctgggtttgcatcaggacacgtagccgtgtgg
gatttaaggtcggcttcatctcttctgctgggggaggtggatgaatatacaaaggtgtta
tacgcatgtcactcgttccgcgcgcacaacaaaccacttcgaggcatcgtgtggtgtccg
ttcgattccaatatccttgttaccgggggaaacgatcggatgttgaagttgtgggataga
agaagaacggatgctcctttgcatgaaaacaatgtaactaaatgcagtttcacgtctgaa
atggaatggccaataaattacaatggtatctacactgctaccaacaatgcattctctatt
cctcatttccacagttgtttgtatgttaagttgaacgttcagtcagatgctctgccccca
atcaacaatgtgttcccaaataaggccacctcgtggacagtgacatctagtgactggtta
aactgtgttgggggaggggacgtgacggggttggccatgattcatatcagtaataactgg
aaccgcggtaacatatatgttaagaaggtttcaaggatgttgttgttccaatgtgatgtc
atagatgatgaagtgacatcacaggaggtcacagataatgaaagtaaggatggtgaagat
tacaaactagttttccgtgatgcagacacaaacactgacctcagcaaagctaacaagctt
gaatcctacaagagattgaggacatatgattgcttcaaggatgacaatttcaagcccaat
tatccagccatcttaaaaatgagatggaatccgaacattacctcgtacactagcattgct
acagctaccaactctggcctggttcgaatacaaacagttgaaggtttggtttcaaaagaa
gtggaaacagctcagcaagaagcgatctcgcaagatgtttaa
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