Ciona intestinalis (yellow sea squirt): 113474707
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Entry
113474707 CDS
T01056
Name
(RefSeq) serine/threonine-protein kinase SMG1-like
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113474707
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cin01001
]
113474707
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
113474707
Enzymes [BR:
cin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
113474707
Protein kinases [BR:
cin01001
]
Serine/threonine kinases: Other
PIKK family [OT]
113474707
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113474707
mRNA cycle factors
Common to processing body (P body) and stress granule
113474707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMG1
Motif
Other DBs
NCBI-GeneID:
113474707
NCBI-ProteinID:
XP_026692605
LinkDB
All DBs
Position
11:complement(298908..312178)
Genome browser
AA seq
1161 aa
AA seq
DB search
MLLLRSSDAEMRHFRDRNFHTSSHSDDASLWNLIQRVCRREDDKERRILAASHLLEFISK
TENKNLISRSLDQILNALIDVFFERSGVDLQKDVANIIGRIGQFVSADPYPFFQWMLRQF
QSIANDNVRNYLLESLNKLLELDMEERKYGKVIGLLMDQLQQVLENLDSPTHLPLCINPL
VIIAVNYPQAFAKHFRDTVDILVGWHIDHTQSMSLTLFASESLIKLHVHWLTDLQFSLTL
LSQFLEDMEAYAEDFHKLQNGDVTDDGTINDESCLPKMAALMRVFSTVLRSIGPVFHASN
GPPITEAFILETLQRVIVCTQLTGDASLAVTRAADECARLLLGAVQWRGEDMLSESLLTY
AVHAVERSRSEPRLLLVLDFITVMVQEVGSALPAWFIQGLLGPSSRLLPLKHSRNPLLTS
ELLALYQACLAVKSVPLLQTAYKHVTGELQHAINGLLEIHGEDVKLDVVADNPFNKSEDS
GTDPHDNHDDIIMVDGNHEERLLKTAMFDVVALLEVADARNSLIGMYALSPSIFEFLHSG
LDLVHKHLSMLHPALQYSILHVMYSHCQRHKNFVSSFLGGSPAPTNDPGAGGSTSFIDNV
NTATHLHFPSILDTVRKLMLEKSTSPDARTLLLHWTEDILERLKTNKDPVIFNLKQFIDL
MQAVAVVAMQNNIPQSILASKCLRSAIQSSTSPIIYDITIQCCFILIWSSNTLLRNNYSD
LLLCVPVDRVLQYCDASLTNQSKSSVRQLSQYGHREAWLVKRSTSNKSGNTGTFHAHHFK
DIMERMLKPLTARNTISDDWLEQLYWSSQRRETSQPEPPVLRSRPLCILTSLSSHDMSYI
HWVGLWRAAEYMVVNKLRTPLGRPPETFQRVEGAIRDFEHKLFNSGPPNIPKSTKSKLPP
GSPRNNTHLSTWPALQRPYLLLQFLDHLERLLYNAYEGCAIAIQPPNKAVRTFFYTNRQT
CEQWMNRLRLAVMRISLASGLETLAFQHGQAILHDMKTKNNTTGVEFESAVAMTTEALVR
LGSPQNLDGLHRWCRGLNGPKQQWGWIKVAKYDAARNYEDAVKEYKSIFNVRRNSECSGD
AAPPGDGRKTISPSRAFVTKQIIRCYSQLSCWEELENFKKQISTENSTNKKIFSTNIEQI
RFLSSYCYLCWLLCSVYLKTI
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgttgctgttaagaagctctgatgcagaaatgcgacatttcagagatcgtaacttccac
acttcgagtcatagtgatgacgcctccttgtggaaccttatacagcgcgtgtgtcgcagg
gaagatgacaaggaacgaagaatcctcgctgcttctcatctattagaattcatttccaaa
acagaaaacaaaaatttaatatcaagaagtttggatcaaattctcaacgcactaatcgat
gtattcttcgaaagaagtggagttgatcttcaaaaagatgttgcgaatatcattgggagg
attgggcagtttgtttctgctgatccgtatccattcttccaatggatgttacgacaattt
cagtcgatcgccaatgataatgtgaggaactatttgcttgaaagtctcaataagttgctg
gaacttgacatggaggaaaggaaatatggaaaagttattggtttattaatggatcaactg
cagcaagttttggaaaacttagattcaccaactcatcttccactgtgtattaacccactt
gttattattgctgtcaactatccacaggcgtttgccaaacatttccgtgacactgttgat
atcttggttggttggcatattgatcacacacagagtatgtcgctaacactgtttgcatca
gaatcactgatcaaacttcatgtacactggttgactgatttgcaattctcactaacattg
ttgagtcagttccttgaagatatggaagcatatgctgaggatttccacaaactacagaat
ggtgatgtcactgatgatgggacaataaacgatgagtcatgtttgcctaagatggcggcg
ctgatgcgggtgttttcgaccgtactacgtagcattgggcctgtgttccatgctagtaat
ggacctcctataactgaagcatttatattggagacactccagcgagttattgtttgcaca
caactaaccggggatgcctcgcttgcagtcacacgagctgccgacgaatgtgccaggttg
ctccttggcgccgtgcagtggcggggtgaggacatgttgtcggagtcgttgctcacgtac
gccgtgcacgctgtcgagcgctcaaggtccgaaccgaggttgctacttgtacttgacttc
atcacagtgatggtgcaggaagtaggatcagcattacctgcatggtttatacaagggttg
cttggtccaagttcaaggttgcttccattgaaacattcacgtaacccactgctcaccagt
gagctgcttgcgttgtaccaagcgtgtttggctgttaagagcgtgcctctactacaaact
gcttataaacatgtaactggtgagttgcaacacgccatcaatggattgcttgaaatacat
ggggaggatgttaagctggatgtagttgccgataatccattcaataaatctgaggattct
ggtacagatcctcacgacaaccacgatgacatcataatggtggatggcaaccatgaagaa
aggttgttgaagacagcgatgttcgatgtggtggcgttgcttgaagttgctgatgcgaga
aactcacttattgggatgtacgcactatcaccaagtatatttgaattcttacactccggt
cttgatctcgtccataaacatctgtccatgcttcatcccgcgttacaatattcaatacta
catgtcatgtactcacattgccaaagacacaagaattttgtgagtagcttcttaggggga
tccccagcccccaccaatgaccctggggctgggggaagcaccagtttcatcgataatgtt
aacacagccacccacctccacttcccaagtatattggatacagtgaggaagttgatgttg
gagaagtcgacttcacctgatgcaaggacactgttgttacattggaccgaagatatcttg
gaaagattgaaaacaaacaaggatcccgtgatattcaacttaaagcagttcattgacctt
atgcaggctgtggctgttgttgcgatgcaaaacaacatccctcaatcaatccttgcatcc
aagtgtcttcgatcagcaatccaatcttccacatcacctatcatatatgacatcacaata
caatgttgtttcatacttatttggtcatcaaacacattattacgcaacaattactcggat
ttattgctgtgcgtaccggtggatcgggttttacaatactgtgacgcatctttgacaaac
caatcaaaatcaagcgttcgtcagttgtcacaatatggccaccgggaggcgtggttggtg
aaacgatcgacttcaaacaaatctggcaacactggtacatttcatgcgcatcactttaag
gatattatggaaaggatgctgaaaccattaactgcaagaaacacaatatctgatgactgg
cttgaacaattatactggagcagtcagcgtagagaaaccagtcaaccggaaccaccagtg
ctacgtagtagacctctatgtatattaacgtcattatcatcacatgacatgtcatatata
cactgggttggattatggagagcagccgaatacatggtagtaaacaaactacgtactcca
cttggacgacctcctgagacttttcagagggttgaaggtgccattcgtgactttgaacac
aaattgttcaactctggtccaccaaatattccaaaatctacgaaatcgaaactccccccg
ggctccccacgtaacaacacccacctatctacatggccagcgttacaacgaccgtatctt
ctgctacagttccttgaccatcttgaaaggttattgtacaatgcctatgaaggatgtgct
attgctatacaaccaccaaataaggcagtccgtacattcttctacacgaaccgacaaaca
tgtgaacaatggatgaacaggttacgacttgcagtgatgcgcatctcattagcaagtggt
ttggaaacactggccttccagcatggccaagctatactgcatgatatgaagacaaagaat
aacacaactggtgttgagtttgaatcagctgtagccatgacaaccgaagcgttagttaga
cttggttcaccacaaaacttggatggattacatcgttggtgccgaggtttgaacggtcct
aaacaacaatgggggtggattaaagtagccaagtatgatgctgctagaaattacgaagac
gcagtgaaggaatacaaatccatcttcaatgttcggaggaattctgaatgttcgggtgat
gcagctccacccggtgatggaagaaaaacaatatctccgtcgcgtgcctttgttacgaaa
cagataatccgatgttacagccaactcagttgttgggaggaattagaaaacttcaagaaa
caaatttcaacagaaaattcaacaaacaagaaaatcttttccacaaacattgaacagatc
aggtttttatcaagttattgttatttgtgttggttgttatgctctgtttatttaaaaact
atctaa
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