Ciona intestinalis (yellow sea squirt): 113474739
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Entry
113474739 CDS
T01056
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113474739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
113474739
04121 Ubiquitin system [BR:
cin04121
]
113474739
03036 Chromosome and associated proteins [BR:
cin03036
]
113474739
03400 DNA repair and recombination proteins [BR:
cin03400
]
113474739
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113474739
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
113474739
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
113474739
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
113474739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
BRCT
Ank_5
zf-RING_6
Ank_3
BRCT_2
zf-RING_5
RTT107_BRCT_5
zf-RING_UBOX
Sina_RING
zf-C3HC4_2
zf-C3HC4
Ank_KRIT1
zf-C3H2C3
zf-C3HC4_4
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
113474739
NCBI-ProteinID:
XP_026692876
LinkDB
All DBs
Position
1:91010..93876
Genome browser
AA seq
528 aa
AA seq
DB search
MAAKVKYPETSKALEKLENLLKCNRCLTFMKVPITLWNCDHVFCKKCLDDESCCPVCKTP
CWASDQQINNSLSVISSICAQLRSHLTDTNQTPRIKSGSITNKVEANLKANCNDEENCKN
TLPSKRTPVRRSITASATKQWALKSVEKKTPNPKRCKTELPPMPRSMVKNKKGETKLHLA
AIQRDLAALRLLLGEEGTDVNAKDNAGWTSLHEACNRGYSDIAEALINSGAFVDIPGYEN
ETPLMDAVANNRVETVKLLVQKGANVNLRSLQGKTAITLARNDEIKQLLLSVQSETLENY
APISISQNCNFPMVISGSSSVSADVLSKAVACLNANLSGEDTSKISHLIVKCDQNNRTNR
TLKYLQAVATGAWVLSDAWLNVCIRENGYVSENGYTVDGCSEDFVLHGPSRSNVGKRKCL
PRLFDGCHFYLSGKFTPPSLKKEEITELITLAGGEILSREPKPDSDCVQACTKISYHARP
TCTHYLHTYYIVFDSKNKSQRMVVQGKVATVTETWILYCISQFSILSS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaaagtaaagtatcctgaaacgtccaaagcgttagaaaaacttgaaaatctt
ttaaagtgtaatcgttgtttaacgttcatgaaagtgccaataacattatggaattgcgac
cacgtgttttgtaagaaatgtttggacgacgaaagctgttgccctgtatgtaaaacgccg
tgttgggcgtccgatcagcaaataaataattctttaagtgtaatatcttcaatctgcgct
caattgcggtcgcatttaaccgacacaaaccaaaccccacgcatcaaaagtgggtctata
acaaataaggtggaagcaaatttgaaagctaactgtaatgatgaagaaaattgtaaaaat
actttaccaagcaaaaggactccagttcgtagatcaattaccgcaagtgctacgaaacag
tgggcgttaaaatctgtagaaaagaagacaccgaatccaaaaagatgcaaaacagagctg
ccgcctatgccaaggagtatggtgaagaataaaaagggtgaaacaaagcttcatttggct
gccattcaaagagatttggcagcacttagattgttgttgggggaagaaggcacagatgta
aatgctaaagataatgctggttggacgtcattacatgaggcgtgcaacagggggtattct
gatatagcagaagcattgattaattcaggagcttttgtggatatcccaggttacgagaat
gaaacgccattgatggacgctgtagcaaataaccgagttgaaacagttaagttgttggta
caaaaaggcgcgaatgttaatttaagaagtttacaaggaaaaacagcgattactttggca
agaaatgatgaaattaagcaactgcttctgtctgttcagtctgaaacgctagaaaattac
gctccgatttctatctcacaaaactgcaattttccaatggttatatctggctctagttct
gtttctgctgatgttttaagcaaagcagtggcttgtttaaatgccaatctatctggcgaa
gacacttcgaaaatttctcatttgattgtaaaatgtgaccaaaataaccggacaaatcgg
acattgaaatatttgcaggctgtagcaacgggggcttgggtgttaagtgatgcatggctt
aatgtgtgtattagagaaaatgggtatgtaagtgaaaatggttatacagtagatggttgt
agtgaggactttgttttacacggcccgtcacgctcaaacgtcggaaaacgaaagtgtctt
ccacgactttttgacggttgccatttttatctatcggggaagtttacacctcctagtcta
aaaaaagaggaaatcacggaacttataactctcgctggcggagagattttatcacgggag
ccgaaacctgacagcgactgtgtccaagcatgtacaaaaatatcctaccatgcgagacct
acttgtacccactatcttcatacttattatattgtatttgattccaagaacaaatcccaa
cgaatggtggtacaaggaaaagttgccacagtgaccgaaacctggattctgtattgtatt
tcacagttttctattttaagttcataa
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