Ciona intestinalis (yellow sea squirt): 445628
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Entry
445628 CDS
T01056
Symbol
betaTrCP
Name
(RefSeq) beta-transducin repeat-containing homologue protein
KO
K03362
F-box and WD-40 domain protein 1/11
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04120
Ubiquitin mediated proteolysis
cin04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
445628 (betaTrCP)
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
445628 (betaTrCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
445628 (betaTrCP)
03036 Chromosome and associated proteins [BR:
cin03036
]
445628 (betaTrCP)
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
445628 (betaTrCP)
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
445628 (betaTrCP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_C
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-TrCP_D
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
F-box-like
Beta-prop_RIG_2nd
Beta-prop_IP5PC_F
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
WD40_like
NBCH_WD40
Beta-prop_DCAF12
WDR90_beta-prop_4th
Beta-prop_SPT8
F-box
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_VPS8
WD40_RFWD3
Beta-prop_Nup120_160
Nucleoporin_N
Beta-prop_WDR11_2nd
F-box_5
DUF1513
Motif
Other DBs
NCBI-GeneID:
445628
NCBI-ProteinID:
NP_001027626
Ensembl:
ENSCING00000009295
UniProt:
Q86SD3
LinkDB
All DBs
Position
5:2913318..2927252
Genome browser
AA seq
621 aa
AA seq
DB search
MDSDPDDCIFEGDENEEVIGQQRMDSPQHMEIANGSNNDDSSNDEVMDDNLPAAMMMQGV
PVSIGIDNHPTASSNVSNSNPMQHQSVTLSILPASHNIQSLQDRIDVRNTNLDSGPILTN
DTNYNPAQTVLSPRLRKLSQQLSLSENYKNERDSCTKHFDTWSEQEQVDFVEHLILRMCH
YQHGQINCFLKPMLQRDFISALPARGLSHVAENILTYLDAKSLGAAELVCREWYRVVQDG
HLWKRLIERMVSTHSLWKGLSERMGWGQHLFKGKPENSVPDSFFRSLYPSIISDIEKIES
NWRCGRHDLKRIMCRSDNSKGVYCLQYDDDKIVSGLRDNTIKLWDRRTLENTKVLTGHTG
SVLCLQYDERVIITGSSDSTVRVWDVNSGDLVNTLVHHCEAVLHLRFDNGLMVTCSKDRS
IAVWDMVSAKEINMRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTLTCEFVRTLNG
HRRGIACLQYRDRLVVSGSSDNTIRLWDIEFGACLRILEGHEELVRCIRFDNKRIVSGAY
DGKIKVWDLQAALDPRSPSSTLCLRTLVEHTGRVFRLQFDEFQIVSSSHDDSILIWDFLD
VPQAPTEATKSPNRTYTYVQR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggacagtgaccctgatgattgcatatttgagggtgatgaaaatgaagaagttattggc
caacaacgaatggactccccacaacacatggaaattgccaacggttcaaacaacgacgat
tcatctaatgatgaagtaatggatgataatcttcctgctgccatgatgatgcagggtgta
cctgtctctatcggcattgacaaccaccctactgcatcaagcaatgtttccaactccaat
cccatgcagcaccaatctgtcacgctctccatcctccccgcctcccacaacatccagtcc
ttacaggatcggatcgacgtgaggaacacgaacctcgactccgggcccattttaacaaac
gacacgaactacaacccagcacagaccgtgctgtcacccagactccgaaaattaagccag
cagctgagtttgagcgagaattataaaaacgagcgtgactcttgcacaaagcacttcgac
acgtggtcagaacaggagcaggtcgactttgtggagcatcttatccttagaatgtgccat
taccagcatggacagataaactgctttcttaaaccaatgttgcaacgggattttatatca
gcactgccagcacgaggcctttcacatgtagcagaaaacatacttacataccttgacgca
aagtcactcggtgcggctgaacttgtgtgtagggaatggtacagagttgtacaagatggt
cacttgtggaaacgtcttattgaacgaatggtcagcacacattctctgtggaagggcttg
tcagaaagaatgggctggggccaacatttgttcaaaggaaagccggaaaattccgttcca
gattcattcttccgcagcctatacccttccataatatctgacattgagaaaattgagtct
aactggcgatgtggcagacatgacttgaaacgaataatgtgccgaagtgacaacagtaaa
ggtgtatattgcttacaatatgatgatgataaaattgtatccggtctccgtgacaacacg
attaagttatgggatcgacgcactcttgaaaatacaaaggtcctaactggccacacgggg
tcagtattgtgcttacaatacgacgagcgtgtcataatcactggttcatcagattcgaca
gtgagggtgtgggatgtaaatagcggtgacctagtcaacacacttgtacatcattgtgag
gcagttctgcatttaagattcgacaatgggctcatggttacttgctctaaggaccgttcg
attgctgtatgggacatggtatcagctaaagagataaacatgaggagagtattggttggc
cacagagctgctgttaatgtggttgattttgacgacaaatatatcgtttctgcatctggg
gatagaactattaaggtgtggaacacactcacttgtgagtttgtgcgaacactcaatgga
cacaggcgtggcatagcgtgcttgcaataccgtgaccgcctcgtagttagcggttcttca
gataatacaatacgattatgggacatagagttcggtgcgtgtcttcgaatattagaaggt
catgaagagttagttcgttgtattcgattcgacaacaaacgaattgtcagtggtgcatac
gatgggaaaatcaaagtatgggatttacaagctgcccttgaccccaggtcaccatcaagt
acattgtgtttgagaactttagttgagcacactggccgtgttttccgacttcaattcgat
gagtttcagattgtgagcagttctcacgacgactctattctaatctgggacttcttggac
gtcccacaagctcccactgaagccaccaagtctccaaaccggacgtacacttatgttcaa
cggtga
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