Ciona intestinalis (yellow sea squirt): 445643
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Entry
445643 CDS
T01056
Symbol
pax6
Name
(RefSeq) homeobox transcription factor Pax6
KO
K08031
paired box protein 6
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
445643 (pax6)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
445643 (pax6)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAX
Homeodomain
HTH_23
HTH_32
HTH_Tnp_IS1
Homeobox_KN
Ntox28
Motif
Other DBs
NCBI-GeneID:
445643
NCBI-ProteinID:
NP_001027641
Ensembl:
ENSCING00000006503
UniProt:
Q8TA62
LinkDB
All DBs
Position
9:5702312..5712433
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AA seq
497 aa
AA seq
DB search
MATYDSCRQASSMALCFNRESLPHKGHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGAR
PCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIF
AWEIRDRLLNEGICNNDNIPSVSSINRVLRNLNGDHQTGGFIETNGRDPKSGSQLGLEWS
LTCNGWLPQQTMCQEQIAAEGLMGLKGKESVVESEAKDGSSEARLQLKRKLQRNRTSFTQ
IQVEALEKEFERTHYPDVFARERLATKIDLPEARIQVWFSNRRAKWRREEKIRSQRSSAA
SDGSDVMRRTNDQQSIGQCGVYSSVTQQHAQANHQLPAYHMPPEPYTGMNGYQMTSLPQT
MKVEHFPPMHRMHEAPYLYGLSSGGPSNLTPPPHYTSYDHDRRVEEPSHNTIPTPPSSAN
QPSPDHDHHGSHMQPLDGGIYQASLSGMHVGHQHHALVGAQATDQSASSMIVPPMTALQN
PANFHTAEGYWQSGVQG
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtacgattcttgtaggcaagccagcagcatggcgttgtgttttaatagggaa
agtcttccacataaaggtcatagcggaatgaatcaattaggcggaatgttcgtcaacggc
cgaccccttcctgacagtattcgccaaaaaatcgtcgaatttgcacataacggtgcgcgc
ccttgcgacatctcgcggatcctgcaagtatcgaacggatgtgtcagtaaaattttagca
agatattacgaaactggaacaatccgaccacgggcaatcggggggagcaagcctcgagtc
gcaaccccggaagtcgtcaacaaaatcgcttcctacaagcgggagtgtcccagtatattt
gcatgggagatcagggatcgtttgttaaacgaaggaatttgcaacaacgataatatcccg
agtgtgtcttccataaaccgcgttcttcgaaacttaaacggtgaccaccaaaccggaggt
ttcattgagacgaatggtcgagatccaaaatcgggttcgcagttggggttagagtggtca
ttaacttgtaacggttggttgccccagcaaactatgtgccaggaacaaattgcggccgaa
ggtcttatgggactcaaaggcaaggaatcggttgtggaatcagaagccaaagacggtagt
agtgaagcccgtcttcaattgaaacgtaaactccaacgaaaccgaacctctttcacacaa
attcaagtcgaagctcttgaaaaagaatttgaaaggactcactacccggatgttttcgca
cgggaaaggctggcaacaaaaattgatttacccgaagctcgaatacaggtttggttttcg
aaccgtcgcgcaaaatggcgacgtgaagagaaaatacgtagccagcgcagcagcgccgct
agtgacggctctgacgtaatgcgtagaacgaacgatcaacaaagtatcggccaatgcggc
gtctactctagcgttacacaacagcatgcacaagccaaccaccagctcccagcttaccac
atgccacccgaaccttacacgggaatgaacggataccagatgacgtcactccctcaaacc
atgaaagtcgagcacttcccacccatgcacagaatgcacgaagctccatacttatacggg
ttatccagtggtggtccaagcaaccttacacccccaccacactacacatcgtatgatcat
gaccgcagagttgaagaaccatcccacaacacaatacccacaccccctagctcagccaac
caaccatcgcccgatcacgaccaccacggctctcatatgcaaccgctagacggcggtata
taccaagcatcgttgagtggtatgcacgtaggccatcaacaccatgcactagttggcgcc
caagctactgaccaatcagcttcgtccatgatcgttcctccaatgactgccctgcagaat
cctgccaacttccatactgccgagggttattggcagtcaggcgtccaaggctaa
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integrated database retrieval system
