Ciona intestinalis (yellow sea squirt): 445665
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Entry
445665 CDS
T01056
Symbol
nr1
Name
(RefSeq) nuclear receptor 1
KO
K08362
thyroid hormone receptor beta
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04080
Neuroactive ligand-receptor interaction
cin04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
445665 (nr1)
04081 Hormone signaling
445665 (nr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
445665 (nr1)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cin03310
]
445665 (nr1)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
445665 (nr1)
Nuclear receptors [BR:
cin03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
445665 (nr1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
445665
NCBI-ProteinID:
NP_001027658
Ensembl:
ENSCING00000021968
UniProt:
O77154
LinkDB
All DBs
Position
11:4238241..4243767
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AA seq
587 aa
AA seq
DB search
MERNQIIPNSIDCFPRHAMGRGNKDKRKNMKGYIPSYLDGNEECVVCGDKATGYHYRCIT
CEGCKGFFRRTVQKDLQKTYQCKQRGKCQVNKVSRNQCQMCRYEKCIATGMATDLVLNED
KRIAKRKLIERNRQLRRHKDISHVMGTWKVGRGSDDDNHVISAVVQAHNDVINDDDFEET
SRSPTHGEQFSSALTNAVTRVVEFAKRLPFFTGKASTDDQVAMLKGCCMEVIVLNCVASY
DRARCTLKLFSKVIITREKLRRTRFDHFADDLFRTAEEMSILQLTETEIAMLKAIIVFAA
DRPRIQHIDEIRNIQNSLLQSLRYYVMDKAQHEYAVWSMLLIKMADIRRISNGFAASLMD
MKLNNPEELVVLFAKDRSGTSDDHTPLQDARMDTTKTSASQKLCQKGGNKENRMDNSKQV
STSVKKESDSWPPTYKRDEPFMSNRALLLQHYGVWSCFPKPSYDLPNPSVPKPSGFQPLQ
LPHAALSGHVGKTLGRNNFILPTALHPSLNTVKHLDMFRVMPVDSGEFIPSINPPAYIAN
SKTNVSPQTRWLLKERFTQEKGTHISDKNVHANQNATEEAINLSLKL
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggagagaaaccaaattattccgaattcgattgattgttttccacgtcatgccatggga
agaggaaataaagataaacggaagaacatgaaagggtacattcccagttatttagatggc
aacgaggaatgcgtggtttgtggtgataaagcgacaggatatcattatcgatgtataaca
tgcgaggggtgtaagggatttttccggcgtactgtccagaaagacttgcagaagacatat
caatgcaaacaacgcgggaaatgtcaggtcaacaaagtatcaaggaaccaatgccagatg
tgtcgatacgagaaatgcattgctaccgggatggcaacagacctggttttgaatgaagac
aaacgaatagcgaagcggaaactgatcgaacgtaatcggcaactacgacgtcataaagac
ataagtcacgtgatgggaacgtggaaagtcgggcgaggaagcgacgatgataatcacgtg
atatctgccgtcgtgcaagctcataatgacgtcataaatgacgatgacttcgaagaaacg
agccgatcaccgacccacggcgaacaattctcaagcgcattgacgaacgctgtcactcgg
gtggtggagtttgcgaaacggttgccattttttactggaaaggcttcaacagacgaccaa
gttgcaatgttgaaaggttgttgcatggaagtgatcgtgttgaactgtgtggcttcatat
gatcgagctcgctgtacattaaaactgttctcaaaagttataataacaagagaaaaatta
cgccgaacgagattcgatcattttgccgacgatttgtttagaactgcagaagaaatgtca
attttgcaactgaccgaaacagaaattgcgatgctaaaagctattattgtgtttgctgca
gatcgaccacgaattcaacacattgacgaaatcagaaatattcaaaactctttgcttcaa
tcgctacgatattacgtcatggataaagctcagcacgaatacgcagtatggtcaatgcta
cttattaaaatggctgatatacgtcgaataagcaacgggttcgctgcttcacttatggac
atgaagttaaacaacccagaagaactggtcgtattgtttgccaaggaccgcagtggtact
tccgacgatcatacacctctacaagacgcaagaatggacacaaccaaaacctcagcatct
caaaagctatgtcaaaagggtggcaataaagaaaaccgaatggataattcaaagcaggtt
tcgacaagcgtgaagaaagagtcggactcgtggccgccaacgtataagcgggacgaaccc
ttcatgagtaacagagccttactactgcagcattacggtgtgtggtcgtgcttcccaaaa
ccaagttacgatcttccaaatccatccgtacctaaaccaagtggattccagccgttgcaa
ctgccacatgcagcattatcagggcacgtagggaaaactttgggtagaaataatttcatc
ctgcctacagcacttcacccaagcttgaacacggtgaaacatttagacatgtttcgtgta
atgcctgtagatagcggggaatttataccgagtatcaatccaccagcttacattgcgaac
agtaaaacaaatgtttcgccccaaacacggtggttattaaaagagcgttttacacaagaa
aagggcacgcatatttcggacaaaaacgtccacgcaaatcaaaatgcaacggaagaagca
ataaacttgtcactaaaattataa
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