Ciona intestinalis (yellow sea squirt): 445733 Help Entry 445733            CDS       T01056                                  Name (RefSeq) collagen type IX-like precursor   KO K08131   collagen type IX alpha Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin04512   ECM-receptor interaction cin04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cin00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     445733  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     445733  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00535 Proteoglycans [BR:cin00535]     445733 Proteoglycans [BR:cin00535]  Extracellular matrix (ECM) proteoglycans   Others    445733 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen Motif Other DBs NCBI-GeneID:  445733 NCBI-ProteinID:  NP_001027707 UniProt:  Q6IVJ4 LinkDB All DBs Position 8:complement(5997342..6011806) Genome browser AA seq 734 aa AA seqDB search MFMHKRRVILLVVALLLVTADARKRKRKKLRKSRAIDLITRSRRQGEPDPPADCPVCPAG PAGQPGPPGPPGEIGIQGDPGPDGFAGIDGLDGERRPPGPQGFQGFSGQKGEPGEIGAPG TEGLIGPAGIPGSLGLPGPAGPQGPPGDVNTVEGPPGRPGAPGPRGPPGLPGPSGGATAG DIGSGADPSGPVYVGPPGYPGPKGHKGYKGEPGPDGKQGPKGDAGPEGEQGPAGPGGESG PRGARGYPGEDGRKGEVGPAGIPGEMGAPGEQGLQGAEGPPGSPGERGAKGGTGDRGPLG NPGGPGLPGEPGLPGRNGADGIPGTPGERGRPGESGPKGTEGAIGAPGIPGDIGPEGPTG KAGAQGDPGEDGARGPKGEVGPIGQTGLQGPAGEQGRVGDAGPSGESGPPGPLGLQGFFG EQGIPGPPGERGFPGIKGHKGASGMTGAKGEPGIDGIEGPEGSPGPQGTAGTPGERGSPG TPGEIGQRGPGGPPGIIGPEGPRGQSGPRGPQGESGPRGVPGLQGPPGRMPSDQKILEIC RRVLRDEMRGMMAATQTRRFITGGVPGRPGPVGPPGQQGPQGQSGLPGKTGMQGAQGVPG MPGRTGPKGFGGDKGDRGAPGIGSVGLPGPAGPPGPQGSPGFGKDGRYGERGEPGLPGPT GYIGPQGSVGPPGYCGPSTCLMGQVRGIQQPKGPNGQKGPDAADSPLGSEPPAGTNRRRA ARTRHRPEMNDIQF NT seq 2205 nt NT seq  +upstreamnt  +downstreamnt atgttcatgcacaagaggcgagtgatcctcttggtcgtggcgcttctgcttgtaacggcg gatgcgaggaagcgaaagagaaagaagctccggaagagcagagcaattgatctgatcact cggagcagaagacaaggagagccggacccaccagcggattgcccggtttgtccagcggga cctgcaggacaaccaggacccccaggaccacccggtgagatcggaatccaaggagatcct ggaccagatggtttcgctggaattgatggacttgatggtgaaagaagaccaccaggaccc caggggtttcagggattctctggtcaaaagggagaaccaggagaaattggtgcacctgga acagagggactcattggacctgcagggataccgggaagccttgggttacctggtccagct ggcccacaaggacccccaggtgatgtgaacaccgttgagggacctcctggacgaccaggt gctcctggaccaaggggaccaccaggacttcccggaccatctggaggcgctacggctggt gatattggttcaggggctgatccatctggcccagtctatgttggaccaccaggttatccc ggacccaagggtcataagggatacaaaggtgaacccggtcctgatggaaaacaaggtcca aagggtgatgccggtcctgagggagaacaaggaccagctggtcctggcggtgaatctggt ccacgtggggcacgaggttacccgggagaagatgggagaaagggagaagtaggccctgca ggaatacctggagaaatgggtgcacctggtgaacaaggtttacagggagctgaaggtcct cctggcagtccaggagagaggggagccaagggaggaactggggatcgaggtcctcttgga aaccctggaggacccggacttcctggagaaccgggtctacctggtagaaatggagctgat ggtatcccaggaactccaggagaacggggacgaccaggagagtcaggaccaaaaggaaca gaaggtgccataggagctcctggaatacctggagatattggacctgaaggaccaactggc aaagctggtgcacaaggtgatccaggagaagatggcgcccgtggaccaaaaggagaagtg ggaccaattggacaaactgggttacaaggtccagctggagagcaaggacgagtgggagat gcaggaccatcaggagaatctggaccacctggaccccttggtttacaagggtttttcgga gaacaaggtattccgggtccacctggtgaacgtggattccctggaatcaaaggacacaaa ggagcatctggtatgactggcgccaagggagaacctggtattgatggaattgagggacca gaaggcagccctggaccacagggaactgctggaactccaggagaacgtggatcaccagga acaccgggtgaaattgggcaacgtgggccaggtggaccaccgggcatcattggaccagaa ggacccaggggccaatctgggccacgaggaccacaaggagaatctggaccaagaggcgtc cctggattacaaggccctcctgggcgcatgccaagtgaccaaaagattctggaaatttgc cgtagggtgcttcgagatgagatgagaggtatgatggcagcaacccagacccggaggttc atcactggtggagttcctggaagacctggacctgttggaccacctggacagcaaggacca caaggacaatctggtcttcctggtaaaactggaatgcaaggtgcacagggtgttcctgga atgcctggacgtactggacccaaaggatttggtggtgataaaggtgacagaggagcgcca ggaattggcagcgttggtcttccaggacctgctggtcctccaggaccccaaggatcacca gggtttggcaaagatggtcgttacggagaacgtggtgaacccggcttacctggacccaca ggttacattgggccacagggttctgttggtcctcctggttactgcggcccatctacttgc ttgatgggtcaagtccgtggcattcaacaacctaaaggtccaaatggccagaaaggtcct gatgcagcggacagcccattgggctcagaaccacctgcgggcacaaaccgtcgccgtgct gcacgtacccgccaccgacccgagatgaatgatattcagttttaa

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