Ciona intestinalis (yellow sea squirt): 445742
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Entry
445742 CDS
T01056
Symbol
collagen_XVIII
Name
(RefSeq) collagen XVIII homologue
KO
K06823
collagen type XVIII alpha
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cin04147
]
445742 (collagen_XVIII)
00535 Proteoglycans [BR:
cin00535
]
445742 (collagen_XVIII)
00536 Glycosaminoglycan binding proteins [BR:
cin00536
]
445742 (collagen_XVIII)
Exosome [BR:
cin04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
445742 (collagen_XVIII)
Proteoglycans [BR:
cin00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
445742 (collagen_XVIII)
Glycosaminoglycan binding proteins [BR:
cin00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
445742 (collagen_XVIII)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Endostatin
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
445742
NCBI-ProteinID:
NP_001093903
Ensembl:
ENSCING00000009609
UniProt:
Q86SC8
LinkDB
All DBs
Position
9:complement(5419353..5444293)
Genome browser
AA seq
950 aa
AA seq
DB search
MPASLPVTTNSPIDPKTLALTVASFEPTTSKSMPLVGSVDHRASDRIIQPGLFPVSAVKG
EKGEPGRNGENGIGVPGAAGEVGQKGEAGADSVVAGPPGERGPKGEPGIPGKDGVSLGAG
GVGEKGEKGDQGPMGEQGVGIAGQKGEAGEIGKDGLPGDVGLPGADGVAGPAGAKGEKGV
PGVPGVDGSQGVGLPGADGAKGEKGEVGKAVSVTGPAGAAGPPGVQGEKGEPGEDGDDGE
DGEDGEKGDRGPPGVGIRGPAGPPGTFSAAFADMEGSGFSSMPGEPGPPGPMGPQGPAGV
DGVGKDGEKGDKGDKGDIGPQGPAGKDGVSGPEGQMGIPGPVGAAGPKGEPGEDGRAGLP
GPPGLPGVCEKSDAKMPTDDEDLMEGSGNVEFKKKFSARFTAGLPGVPGVPGPEGRAGLP
GPHGPAGPQGPQGPQGLQGAQGPPGLQGPKGMTGASGEHGAEGPAGVPGAVGPQGNPGVN
GRDGAAGTPGLDGEPGIQGMKGDTGSQGPPGPPGPSAVATTNAEPLTSVVKGEKGEPGAV
IGPDGNVLSAGQKGEPGTPGPMGPPGLSGSAGSKGDMGMPGRRGTPGRHGRDGAEGPPGP
PGSSSGIFGGSSGEKGDKGERGFDGSKGAPGVAGEAGIPGRTGRSGPSGPPGPPGPPGRS
NQHDTRSAALIENTMMTSFPSVAEMQANYQTTAEGTLAFVVNREEMFVKTTLGWRQVMLS
RPIPPPRVEVATLEPETVATTTRAPIVPEVTTTTTTRRTTTTPAATPVVSTSQKSLHMIA
LNFPLRGNTRGIVGADARCFQQARRAGLKGTYRAFLSSRDQNVRSIVRREDRRNVPIVNI
RGEQLFSSWEELFRTEGRMDNPNMIYSFENRQVSTDARWPVKFVWHGSYTDGRLNPMHYC
ASWYTDHKAVTGQASPLSTRRLLAQKPYSCESGFVVLCVENSTRTLRYKR
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcaagtttaccagtgacaaccaattcaccgatcgaccctaaaacacttgcgctt
actgtagcatcttttgaaccaaccacctcgaaaagtatgcccctcgtaggcagcgtggat
cacagagcttccgatcggattatccaacctggtttgttcccggtatccgcagttaagggt
gaaaaaggagaacccggccgaaatggcgaaaatggtattggtgtgcctggtgctgctggc
gaagttggacaaaaaggagaagcaggcgccgactctgtcgtggcaggacccccaggggaa
cgaggaccaaagggcgaaccaggaattcctggaaaagatggagtcagcttgggagcaggt
ggggtcggggagaaaggagagaagggcgatcaaggaccgatgggcgaacagggtgttggt
attgctggacaaaaaggcgaggctggcgaaattggcaaagatggtctgccaggagatgtt
ggactacctggggcggatggtgtcgctgggcctgctggtgccaagggagagaaaggagta
ccaggagttccaggcgttgatggaagccaaggtgttggactgcctggtgctgatggtgct
aaaggagaaaaaggagaagtcggcaaagctgtttcagttaccggtccggctggcgctgca
ggcccgcctggagttcagggtgaaaagggtgaacccggtgaagacggagacgacggcgag
gatggtgaagacggtgaaaagggcgatagaggacctccaggtgttggaataagaggacca
gcaggaccacccggtacattctcggccgcatttgcagatatggaaggctctggtttctca
agcatgcctggtgaacctggacctcctggtccaatgggcccacaaggaccagctggagta
gatggcgttggaaaagatggagagaagggagacaagggtgacaaaggcgacatcggacct
cagggaccagcaggaaaagacggtgtaagtgggcctgagggacaaatggggattccagga
cccgtgggtgcggctgggccgaagggcgagcctggtgaggacggccgtgctggacttcct
ggcccacctggcctgcctggtgtttgcgaaaaaagtgacgcgaaaatgccaacagacgac
gaagacctaatggagggcagtggaaatgttgaattcaagaaaaagttttctgctcgtttt
actgctggactcccaggcgttcctggagtacctgggccagaaggaagagctggactgcca
ggacctcacgggcctgctggaccacaaggcccacaaggacctcaaggattacaaggcgct
caggggccgccaggtcttcaaggacccaaaggaatgacaggcgcatctggtgaacacggt
gcagagggccctgctggtgttcccggtgccgttggtccacagggtaatccaggggtcaat
ggacgagatggcgcagcaggcacacctggactggacggcgaacccggtattcagggtatg
aaaggagatacaggctctcaaggacctcccggaccccctggaccatctgcagttgccacg
acaaacgctgaaccattgacatccgttgttaaaggtgaaaagggcgaacccggtgctgtt
attggacctgacggaaatgtgctttctgcaggacaaaagggagaaccgggtacacctgga
ccaatgggcccacctggtttatctggatctgcaggaagtaaaggcgatatgggaatgcca
gggcgcaggggtacaccaggtagacatggtcgagacggtgcagagggtccacctggtcct
cctggctcttccagtggaatatttggcggatcctccggcgaaaagggtgacaaaggtgaa
cgcgggttcgatggaagtaaaggcgcaccgggtgtggctggagaagcgggcatacccgga
agaacaggtcgatctgggccatctggacctcctgggccaccaggtcctccaggcagaagc
aaccaacacgacaccagaagtgctgctttaattgaaaacacaatgatgacgtcattccca
agtgtcgctgaaatgcaggcgaactaccagaccacggctgaaggtacccttgcatttgtc
gtcaaccgtgaagaaatgttcgtcaagacaaccctgggatggcggcaagtaatgttgtcg
cgccccataccgccaccacgtgttgaagtcgcgacattggaaccagaaacagttgcaacg
accaccagggcaccgatcgttcctgaagttacaactactaccactaccagaagaaccacc
acaacaccagcagccacccctgtggtatctacttcgcagaaatcgctccatatgattgca
ttgaacttcccattgaggggaaacacacgaggtatcgttggtgccgatgccagatgcttc
cagcaagctagacgtgcaggtctgaaaggaacatacagagccttcctttcctcgagagat
caaaacgttcgttcgattgtgcgacgagaagacagacgtaatgttccgatcgttaacata
agaggagagcaattgttctcgtcatgggaagaacttttccgcacagaaggcagaatggac
aacccgaacatgatctattcgtttgaaaatcgtcaagtttccacggatgcaagatggcca
gtgaagttcgtatggcacggatcctacacagatggccgtctcaaccctatgcactactgt
gcatcatggtataccgaccataaagctgtcaccggccaagcctcaccgctttcgaccagg
agattgttggcacaaaaaccatacagttgcgagtccggctttgtggttctctgtgtagaa
aatagtacacgaaccctccgctacaagagatga
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