Ciona intestinalis (yellow sea squirt): 445804
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Entry
445804 CDS
T01056
Name
(RefSeq) uncharacterized protein LOC445804
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
445804
Transcription factors [BR:
cin03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
445804
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
445804
NCBI-ProteinID:
XP_002122233
Ensembl:
ENSCING00000001019
LinkDB
All DBs
Position
Unknown
AA seq
823 aa
AA seq
DB search
MSVCFDAHQHHVATIMNNDMTLLSGHKQTMFNQQSGSQDKWSSVSPNSPDKDIMEHLRKG
TDFSCFASSNDVEFSSGVEGKENGSKGKSGGPFSPEDLFKPNQDENSTSTSEIFSMSSPE
SLSNFCNVKSAVAVARAAATLLESKSSEEENYDESLMNTGSSARSASPGTNDDLSDRDSN
PEKDDMSKDIKDAVSQVLKGYDWTLVPMPVRMNGSQKTKPHVKRPMNAFMVWAQAARRKL
ADQYPHLHNAELSKTLGKLWRLLSETEKKPFVDEAERLRIKHKKDHPDYKYQPRRRKSSK
TASGVGEGTQGAQNQSLKQQSGKVRKQDSQSSDECQGVQQALVANPISGKQQSKQQLSSH
HSPQSVCHSPSNQSPPHQGSITNIYEVMHREQRGYHDSPDATVPCSPPTAINMDESKKPH
STLHSRNSSFGSKQQRGSSIDLTSECSSHSMHGVMDTNTQDIMAKPGFDVTEFEQYMPGA
CNPAVVRQHEEAFGYSCMGEPHAKQKRCNFTDTSQNMPSPVDCSVQQNPMFSPNKQGTPQ
YRPSSWVEGYETGVMTEASVSPNASMDQQFSQPENFSYDSVTSACSPLQSSSVTSQSGEF
NTYSMNQSSPHSCAELPVKKEQISPIQQHFFPHVPPATRFQCSELHKAADVAPQPYQAYF
DANIQRAPMEDTMVDQRADALYHHNAYDHSGPFPNMHGRFDACSAKQQEMNLDSPTRCSP
DPPRPFEHAAYDSNITNPLQRRFSLPLIPQNQQQGGANPAYRHFGHSHNQSLASHYPKPN
ERQQLYSAPEGFSYPHNQHYNMAQQQQNWPLPSTSAEVFSPPH
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtttgtttcgacgcacatcaacatcacgtcgctacgataatgaacaacgatatg
acgcttttaagtggccacaaacaaaccatgtttaaccagcagtcagggagccaggacaaa
tggagcagcgtgtcgcccaactcacctgacaaggatatcatggagcatcttagaaaagga
acagatttttcatgtttcgcctcttcaaatgatgtggaattttcctccggggtggaaggg
aaggaaaatggctcaaaaggcaaaagcggaggaccgttctctccagaagacctattcaaa
ccaaaccaagatgaaaactcgacaagcacgagcgagattttctcgatgtcatcgccagag
agccttagcaatttctgtaatgttaaatccgcagtcgcagtagcacgtgctgctgccacg
ttgctggagtccaagtccagtgaagaggaaaattacgacgaatcacttatgaacactggc
tcatctgcaaggtccgcgagcccaggaacgaacgatgacttgtccgacagggattcgaac
ccagagaaagacgacatgtcgaaagatatcaaggacgcggtcagtcaagtgctcaaagga
tacgactggacccttgtcccaatgccagtgcgaatgaacgggtcacagaagacaaaacct
catgtcaagcggccaatgaatgcatttatggtgtgggcacaggcggccagaagaaagtta
gctgaccagtatccacacttacacaacgctgaactcagcaaaacactcgggaaactttgg
aggttattaagtgaaaccgagaaaaagccgtttgttgacgaggccgaacgacttaggatc
aaacacaaaaaggatcatcctgactacaaatatcaacctcgtcgaaggaaaagcagcaaa
accgcatcgggggttggcgaaggcacccaaggtgctcaaaatcaaagcttgaagcaacag
agcggcaaagttaggaagcaagactcgcaaagttcggacgaatgccaaggagtacagcag
gcactggttgccaacccaatttcaggcaaacagcagtctaaacagcaactgtcgagccac
cattcaccgcagagcgtctgccactcacccagcaaccagtccccaccacaccaaggttct
atcaccaacatatacgaagtaatgcacagagaacagcgtggttaccatgattctccagat
gcaactgtaccatgttcaccaccgactgcaataaacatggacgagtcgaaaaagccgcac
tctacacttcactcccgtaacagctcgttcggctctaagcaacagaggggttcatccatc
gatttgacgtctgagtgctcgtctcattccatgcacggagtgatggacaccaacacacaa
gatataatggccaaacctggttttgatgtcactgagttcgaacagtacatgcccggtgcc
tgtaaccccgcagtcgtacgtcaacatgaagaggctttcggctactcttgtatgggtgag
cctcacgcaaaacaaaagagatgcaatttcactgacacctcccaaaacatgccaagtcca
gtcgactgttctgtgcaacagaaccccatgttttcccccaacaaacaaggtacacctcag
tacagacccagtagctgggttgaaggctatgaaactggtgtgatgacggaggccagcgtt
tctccgaacgcaagcatggaccagcagttcagtcagccagaaaatttttcctacgacagc
gtgacctcagcatgctcaccgctgcaatcatcctctgtgacgtcacaatccggagagttt
aacacgtactcaatgaaccaaagctccccgcactcgtgcgctgagttgccagttaaaaag
gaacaaatttcaccgattcagcagcacttcttccctcacgttcctccagcaacaagattc
caatgctctgagctgcataaagcagctgatgttgccccacagccataccaagcgtatttc
gatgctaatatacagcgggcaccgatggaagacactatggtggaccaacgagctgacgca
ttgtatcatcacaatgcttatgaccacagcggtcctttcccaaacatgcacggtagattt
gatgcttgtagcgcaaagcagcaagaaatgaaccttgattcgccgacccgttgctctccg
gacccaccacgcccttttgaacacgcagcttacgactcaaatatcactaatccactacag
cgccgtttttcactgcccttgatcccacagaaccaacagcaaggcggagcaaacccagcc
tatagacattttgggcacagccataatcaaagcctcgcctctcattacccaaagccaaac
gaacggcagcaattgtactctgcgcctgaaggtttctcctacccccataaccagcactat
aacatggcccagcagcagcaaaactggcctttaccgagcaccagtgctgaggtgttttcg
ccgccgcattaa
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