Ciona intestinalis (yellow sea squirt): 619229 Help Entry 619229            CDS       T01056                                  Symbol fcol1 Name (RefSeq) fibrillar collagen precursor   KO K19719   collagen type II alpha Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:cin00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     619229 (fcol1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cin00536]     619229 (fcol1) Glycosaminoglycan binding proteins [BR:cin00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    619229 (fcol1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  COLFI Collagen DKNYY Motif Other DBs NCBI-GeneID:  619229 NCBI-ProteinID:  NP_001029004 Ensembl:  ENSCING00000006961 UniProt:  Q53UC1 LinkDB All DBs Position 7:complement(1095564..1117549) Genome browser AA seq 844 aa AA seqDB search MKILTAVMLLAMLDLARCQEIGIKGQKGEPGEIPDNVGEGLPGPAGIPGIPGLQGIDGRP GARGPKGDRGTPGRDGNPGTPGIPGPPGPPGAGMDGDLARSYSAGGKGPSPVIAGPPGVM GPRGSPGVPGSPGPQGFQGPPGETGEPGSSGPPGHAGPSGIPGKPGKDGKDGRPGKTGPI GTPGPQGPRGFSGTPGNPGPKGHKGHAGLNGLKGDSGLAGADGEQGAVGEAGPPGISGPR GLPGDRGRPGAAGEPGARGSDGLPGQSGPPGPTGIGGPPGFPGAPGSKGEGGPTGARGPE GPQGSRGEAGTPGSPGPAGLAGSPGIDGASGSKGSTGAPGIAGPPGIPGPRGSPGTQGNI GSAGPKGNTGNPGVQGFRGDQGPKGSMGSTGPQGLQGAQGEEGKRGSRGEAGPPGPIGST GERGAPGNRGFPGQDGLSGPKGSTGRRGRPGVSGPKGSVGDVGRSGEPGLPGARGLTGKP GADGRQGKQGQPGVSGEDGRAGPAGAPGQKGPPGQIGFPGPKGVSGEPGRGGEKGIAGPI GATGPRGSSGDDGMRGPSGPAGPPGPPGPPGPGIDMAAFRMPVISSFKGPNVAADQPVSD VGRDEEMMVVLKELTNSVENIKAPRGVSKKTAARSCMDIYLAEQQQNIVAKNGIRWIDPN GGCTADGIEVYCNFDTMETCVYPTNRHIENGTHYTGESRHVYYGEEMATGSTVRYDPSDE DRVPHADYTSQLTFLRLLSRQVKQHVTFYCRNMVAYYDAAADNKAQALKLRGFGDAEFTA EGDPSTTYRVLHDGCTGRPSTWGKTDIEFTTGFVGRMPITDIAPFDIGGADQQFGAEFGP ACFH NT seq 2535 nt NT seq  +upstreamnt  +downstreamnt atgaagatacttaccgcagtgatgctgctggctatgctggatctagcacgctgtcaggag attggtattaaaggacaaaagggagaacctggagaaattccagacaatgttggggaagga cttccaggacccgcaggaataccaggtattcccggactacaaggaattgacggacggcca ggagcaagaggtccaaagggagacagaggtacacccggacgtgatggtaaccccggaacc cctggtattcccggaccaccaggacccccaggtgcaggaatggacggtgatcttgcccga agttattcagctggaggcaagggaccaagtccagttatagctggaccacctggagttatg ggaccaagaggatcaccaggagttcctggttcaccaggaccccaaggattccaaggaccc ccaggagagactggtgaacctggatctagtggaccacccggacatgcaggaccttctgga attccaggcaaaccaggaaaagatggcaaggatggcagaccagggaaaactggtccaatt ggtactcctggaccacagggaccgagaggattttcaggcacacctggaaacccaggaccc aaaggacataagggtcatgctggtcttaatggtttgaaaggagatagtggtcttgctgga gcagatggtgaacaaggagcagtaggagaagctggacctcctggaatcagtgggccgaga ggtctacctggtgacagaggaaggccaggagctgctggagaaccaggtgctcgtggatct gatggtcttcctggacaatctggaccaccaggaccaactggaattggtggacctccagga ttcccaggtgcgccaggatctaagggtgaaggtggacctactggtgcaagaggacctgaa ggaccccagggttcaaggggtgaagcaggaacaccaggctcccctggaccagctgggctt gcgggctctcctggtattgatggagcatcaggttccaagggatcaactggtgcacccggc attgctggaccaccaggcattcccggcccaagaggctcacctggtacacaaggtaatatc ggatctgctggacctaaaggaaacactggaaaccctggtgttcaaggcttcagaggtgat caaggaccaaaaggaagcatgggtagtactggaccacaaggtctgcaaggagcacaagga gaagaaggaaagaggggttccagaggagaagctggacctcctggaccaattggttcaact ggagagaggggtgcacctggtaacagaggattccctggacaagatggtctatctggtccc aagggaagcactggcagaagaggacgacctggtgtttcaggacctaaaggatcagttggt gacgttggcagatctggtgaacctggtcttcctggtgcaaggggtcttacaggcaaacct ggtgctgatggtagacaaggaaagcaaggtcaacccggtgttagtggtgaagacggtcgc gctggacctgccggtgctccaggacagaagggaccaccaggacaaattggtttcccagga cctaagggtgtatctggagagccaggtcgaggtggtgagaaaggtattgcaggtcccatt ggcgctactggtccacgtggttcgtctggtgacgatggtatgaggggaccttctggacct gctgggccacctggacctcctggaccaccagggcctggaatcgacatggctgccttcaga atgccagtcattagttcattcaagggaccaaatgttgctgcagatcaaccagtcagtgat gtaggcagagatgaagagatgatggttgtattgaaagaacttaccaactccgttgagaac atcaaagcaccacgtggtgtgagcaagaagacagcagctcgctcctgcatggacatttac ctcgcagaacaacaacaaaacattgttgctaagaatggcatcagatggattgatcctaat ggcggctgcactgctgatggtattgaggtttactgtaactttgacaccatggagacatgc gtctatccaaccaacagacacatcgagaacggaacccattacaccggggagagccggcat gtgtactacggggaagaaatggccactggcagcacagtaagatacgacccatctgacgag gacagagttccacacgcagattacacatcgcagctcactttcttgcgtctgctcagtcgt caagtcaaacagcacgttaccttctactgtcgtaacatggtggcttattatgatgctgct gcggacaacaaagcgcaagctctgaaacttcgtggttttggagatgctgagtttactgct gagggagatccaagcacaacatacagggttctccatgatggttgcactggtcgcccatca acctggggcaagacagacatcgagttcaccactggattcgttggacgcatgccaatcact gatattgcaccgttcgatatcggaggtgccgaccagcagtttggtgctgaatttggccca gcctgcttccattaa

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