Ciona intestinalis (yellow sea squirt): 723795
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Entry
723795 CDS
T01056
Symbol
ci-zf(zz)-8
Name
(RefSeq) E3 ubiquitin-protein ligase HERC2
KO
K10595
E3 ubiquitin-protein ligase HERC2 [EC:
2.3.2.26
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
723795 (ci-zf(zz)-8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
723795 (ci-zf(zz)-8)
03036 Chromosome and associated proteins [BR:
cin03036
]
723795 (ci-zf(zz)-8)
03400 DNA repair and recombination proteins [BR:
cin03400
]
723795 (ci-zf(zz)-8)
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
723795 (ci-zf(zz)-8)
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
HECT type E3
723795 (ci-zf(zz)-8)
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
723795 (ci-zf(zz)-8)
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
Other DSBR factors
Ubiquitin ligases
723795 (ci-zf(zz)-8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
RCC1_2
Cul7
ANAPC10
ZZ
SH3_15
Motif
Other DBs
NCBI-GeneID:
723795
NCBI-ProteinID:
XP_026695794
Ensembl:
ENSCING00000000272
LinkDB
All DBs
Position
Unknown
AA seq
1522 aa
AA seq
DB search
MYKKPHDFNDNDDYARYVRDNITIGMMVCCCRTYEEVEEGDIGQVLRLDKDGIQDLNVQA
SWINKGGTYWVRYIHVELIASPSDGALPSTSQTRTIKVGDKVQVKRSITIPRYKWGSVKH
DSVGTVTHFSANGKDVTVDFPQQPHWTGLLSEMELLPVAHDNIPCNSCQVSPIVGPLYKC
GVCPDFNMCGSCFLTCPHATPRHTFNLISEPGAPRVHVGPSRVAPVARQRRRPRTFNAEV
ASEQVHSLEPSTVFDNDFRKSISDIEVSSSKCDWFHLVDGNNETYWQSSDASGQHHITVS
MQPNRLVQLLSLEVDPLDDHYLPSIISVSGGSALHDLHELKMINVRPTSKNILLLSDSLL
HHPYIQIFIHKCYKSGINCRIRGLRVQTRAMEAVVVPRPLSASNSAHSYLASETEDDNNV
LDGVKPRSKRKSRKSSSKKDCAAKVFVWGLNDKDQLGGLKGSKHKTPVASKDLQRLKVTQ
VIGGSKSLFAVTMGGKVYACGESTSGRLGLGPVTGSVSRLTQVLFPQPIKKLAVHSGGRH
AMALTYDGHVYSWGDGEEGKLGHGSRADALTPRKIETFPEKCIRDISCGSSHSAAIGSSG
TLYTWGHGMYGRLGHGNNHTLLKPKPVQALSGQQVVQVACGSRDAQTLCLTQDGLVYSWG
DGDFGKLGRGGSDGCCVPKPVERLSGQDVVKIECGAQFSLALSRCGLVWTWGKGDYFRLG
HGSDQHVRRPQVVEGLREHKVVDVAVGALHCLAVTEGGQVFAWGDNDHGQQGNGGTTVNR
KPMKVQGLEGVKITKLACGSSHSIAFADTSHEAQTFEAIQFHENIDKLGSSYIKKSMKQK
KHHQHTTSYDDKSRVPHIRSKQLSTRGSLVQILLPVLTGNTGNQALQHLMNAMQIYLARS
LLAYALTPSTSLSPSLVFCPPLESNQEVQVKDGNAHSEIASEPCCSSSIRASMSVHSASE
ISSLVAETITTPEEIAPPTPKKDLSVDAGEKMEGGRIKEEDERVYSDFGEDSMEGLLDLL
KLSVSGRMPFKDVKSISGILTSIVKSKAKMGSLLLERSISELEQVTNSVESLSADMKPLV
KESNHPYPDDEETEGKVKIQGAHSLRVVFDRQCSTERRHDTLTFTDVTGAKTFAVLSGRD
WSDWSQSIKLPTNEFRWKFKSDGSVNGWGWKFTVYPIAPLSGATSDDTSMSDRRLLNNPS
FPFVTHLFEIYQAAEKDSDRSVCFKSVEKVVEAFTACLNYNCFGSDQRIWLLKQIKWMAM
YRRSTMKLQTLFEESSSTGTHHVTDNEPLKKVLSQMLQLQYEYEGPLVRTGKHLLYSPFF
TELSSLCCELKIDEFIAKKETQMTSFNQYCLVSRTMDALLKHKPFPYQFIELVRLKIEEV
CGEDEDTSMNQYEDNTYFTHQIDEQLVTWINKRPDDWTLSWVGSGSIFGWGHNHRGQLGG
PEGAKVKIPIPCPSLAALKPIQLVGGEQTLFTVTGEGKVFATGYGAGGRLGIGSNESVAI
PTLIESIQHVHITQVRWWFCLG
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgtataagaaaccacatgatttcaacgataatgatgattatgcacgctatgtgagggat
aatatcactatagggatgatggtatgttgttgtcgtacatacgaggaggtggaggaaggt
gatattgggcaagtattaaggttggataaagatggaatacaagaccttaatgtacaagca
tcatggattaataaagggggaacatattgggtccgttacatccatgttgaactgatagcg
agcccatcagatggtgcgttaccttctacaagccaaacgaggaccattaaagttggagac
aaggtgcaagtaaagcgatcaatcacgatccctcgttataaatgggggtcggtgaagcac
gacagcgttggcacggtaacacacttctcggccaatgggaaggacgttacggttgacttc
ccccaacaaccccattggacgggacttttgtcggagatggagttactgccggtggctcac
gataatatcccctgtaatagttgccaggtgtcgcccatagttggccctttatacaagtgt
ggtgtctgccctgactttaacatgtgtggcagttgtttccttacgtgtccccacgccaca
ccgcgccataccttcaaccttatatctgagcctggtgcacctcgtgtccatgttgggcca
tcacgtgttgcaccagtggcacgacaacgccgacgaccgcgcacattcaatgcagaagtg
gcatctgaacaagtgcattcactagaacccagtacggtgtttgacaatgacttccgtaag
tcgatatcggacatagaggtctcatcatccaagtgtgactggttccacctagtggacgga
aacaacgagacatattggcaatcatcggacgcaagtggtcagcaccatataacggtttct
atgcaacctaacagacttgtacaactactaagcttggaggttgatcccctagacgaccat
tatcttccgtccatcatctcggtgtccggaggatccgctcttcacgatctacacgagtta
aagatgatcaacgtgcgcccaacatccaagaacatcctcctgttatccgactcccttctt
catcatccttatattcaaatcttcatccataaatgttacaagtcaggcatcaactgcagg
atcagagggttgcgagttcaaacccgggccatggaagcagtggtcgtaccccgtccttta
tctgcttccaactccgctcactcttatcttgcttcggaaactgaggatgataataatgta
ctggatggggtcaaacctcgaagcaaacgaaagtcccgcaaaagttccagcaaaaaagat
tgcgctgctaaagtatttgtgtgggggcttaacgataaggatcaactaggaggtttgaaa
ggttccaaacataagacaccagttgcatcaaaagatctgcagagattgaaagttactcaa
gttattggggggtcaaaaagtttgtttgctgtcactatgggtgggaaggtatacgcatgc
ggggaatccacaagtggaagattagggttggggccggtcactgggagcgtttcaagactc
actcaagtattatttccacaacccatcaagaagctggccgtgcattcaggtggtcgtcac
gcgatggcgctaacgtacgatggccatgtatattcatggggagatggggaggaaggaaaa
ctcggtcatggaagtagagcggatgctcttacacctcggaagattgagaccttccctgag
aagtgcatacgcgatatatcatgcggcagttcacacagcgctgctattggttcatccggt
accttgtatacatgggggcatgggatgtatgggagattgggacatgggaataatcatact
ctgctcaaacctaaaccggttcaagccttgagtggccaacaagtggttcaagtcgcatgt
ggcagcagagatgcacaaacattgtgtttaacacaggatgggttggtttattcatggggt
gatggtgactttggcaagctaggtagagggggtagtgatggttgttgtgtgcccaaacct
gtggagagactcagtgggcaagatgttgttaaaatagaatgtggggctcaattctccctt
gcattatcaagatgtgggctggtatggacttggggtaaaggggattattttcgactcggc
cacggatctgaccagcatgtacggcgcccacaagtggtggagggattacgtgaacataaa
gtggttgatgtcgctgttggggcgctgcattgcctcgctgttactgagggcgggcaggta
tttgcatggggagacaacgaccatggacagcaaggtaatgggggaaccacagtaaatagg
aaaccaatgaaggtacaagggttggaaggagtgaagattactaaactggcatgtggttca
agtcatagcattgcatttgccgatacaagccacgaagctcaaaccttcgaagcgattcag
tttcatgaaaacatcgacaaacttggttcaagttacatcaagaagtccatgaagcagaag
aagcatcaccaacacaccacctcatatgatgataaatcacgtgttccacatattcgatcg
aaacaattatcaacaagaggaagcttggtgcaaattctgcttccagttttaactgggaac
actggaaaccaagcattacagcatctcatgaatgctatgcagatatacttagcaaggtcc
ctgctagcttatgccctcacaccttccacgtcattatctccatccttggtgttctgccca
ccattggagagtaatcaagaagttcaagtgaaagatgggaacgcacatagtgagattgcg
tcagaaccttgttgttcatcctccattcgagcatcaatgagcgtccactctgcatccgag
atttcatccttggttgccgaaactatcaccactcccgaggagattgctcctcccactcct
aagaaggatcttagtgtggatgcgggggagaagatggagggagggaggataaaagaggaa
gatgagagagtttactccgattttggggaggatagcatggaggggttgcttgatttattg
aaactatctgtatctggccgaatgccattcaaggatgtcaagtcaatatcgggtattctt
acttctattgtcaagtcaaaggcaaagatgggatcattactattagagagatctatatcg
gagttagagcaagtaacgaacagtgttgaatcgttgtcggccgatatgaagccgttagtt
aaagaaagcaaccatccctaccctgatgatgaggaaacagaaggcaaagttaagatacaa
ggtgcgcattccttacgagttgtatttgatcggcaatgttccaccgaacgtagacatgac
acgctcactttcactgatgttactggagctaaaacattcgccgtgttatcaggaagggac
tggtctgattggtcgcaatcaatcaaactcccaaccaatgaatttagatggaaattcaaa
agtgatggctcggtcaatgggtggggttggaagttcactgtgtaccccatagcgcccctt
agtggggcaacaagtgacgacacatccatgagcgatcgacgattgttaaacaacccatct
tttccattcgtgacgcacttgtttgaaatataccaggctgccgagaaggattccgatcgt
tccgtttgtttcaaatctgtggagaaagtcgtggaggctttcactgcttgtcttaattat
aattgctttggatctgaccaacgtatctggttgttgaagcaaatcaaatggatggccatg
tatcgtcgatcaaccatgaagctacaaacattatttgaggaaagtagttcaaccggaacg
catcatgtgactgataatgaacctctcaagaaagtgttgtcacaaatgttgcaactgcag
tacgaatatgagggaccattagtgagaacggggaaacatcttctgtacagtcctttcttc
acagaattatcttctttatgctgcgaacttaaaattgatgaatttatcgcgaagaaggaa
acacaaatgacaagtttcaaccaatattgccttgtatcgagaacaatggatgctctgctt
aaacataagcctttcccgtaccagttcattgagctagtgaggttgaagatagaggaagtg
tgtggtgaagatgaagacacaagcatgaaccagtatgaggataacacatactttacacac
cagatagatgaacaactggttacttggattaacaaacgacccgatgattggacgttatcc
tgggttggcagtgggtccatatttgggtgggggcataaccatagggggcaacttgggggt
ccagagggggctaaggtgaagatcccgatcccctgcccctccctcgctgcattaaaaccc
atacagttagtgggtggggaacaaaccttgttcactgtgactggtgaaggaaaggtgttt
gcaacaggctatggtgctgggggaagacttggtattggtagcaacgagtcggttgctatt
cctactctaattgaatctatacagcatgtccatattacacaggtaagatggtggttttgt
ttgggttaa
DBGET
integrated database retrieval system
