Ciona intestinalis (yellow sea squirt): 751579
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Entry
751579 CDS
T01056
Symbol
zf(c2h2)-55
Name
(RefSeq) zinc finger protein 55
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
751579 (zf(c2h2)-55)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
751579 (zf(c2h2)-55)
03019 Messenger RNA biogenesis [BR:
cin03019
]
751579 (zf(c2h2)-55)
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
751579 (zf(c2h2)-55)
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
751579 (zf(c2h2)-55)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BTB
CID
zf-C2H2_4
zf-C2H2
Teflon_C
zf-C2H2_jaz
C1_4
zf-C2H2_11
Motif
Other DBs
NCBI-GeneID:
751579
NCBI-ProteinID:
NP_001041468
Ensembl:
ENSCING00000003327
UniProt:
Q1RLH5
A0ACM8Q9W1
LinkDB
All DBs
Position
4
Genome browser
AA seq
858 aa
AA seq
DB search
MDSVLAEYEASLAELTFNSKPHINMLTVLAEENVNHASDIALIIKSQLYQVPLKRKLPVL
YLMDSIVKNFGGRYRKLFSHSLVEIFLNVFEKADGKTRGDLYKLRSTWDTTFPPQVLKEL
DIAVRGVDHNWPMRSKKHSRSKNPLGLGHNSSFDKVSDDELKYGESSRRLSEADQSTEVE
ELVEEEEIEMDDESLGVLEMLEEKLRKRQAELTRLEYLDAGTTSPDVYQPPENVKKDETR
KASISEDEDLAPVSHWMAHSSSFEPKKRTLDDLDRITRGRVISHFTEDATKIPVDTKQEV
EPPVVNSKPQVKMQEVCVQTEEKINVDASVQNTLECKDESTQYRFRRKTKNFMSQYKVPT
KTIGTYFKVKTKDSASQYEPPLPIQDTAADSTCLPLDDEPLVKDEQCRSKLSRKHHALMV
LQSLSRQQDLGMLCDITLAAQGELFKAHKVILAACSDFFHTLFASEEIRQTPLSYIELQG
ITASALRLVLDYIYTSEVSVGDSIKNTQEIITAAKRLKINSLLPACNALEQALLSDQDLS
GLVISNTELVFPNSKINYGNSGSFMHSSDETSSLEFVQKPHIKREHGIYDDTDSPVSPEL
KPIINETYEAPNSLKHKLSETKVKEKAVKRKERSQSCVEVSTTVKRRKSEDTVKPYSCNS
CHKTFWKEKSLHSHRAKSHPNLTLGQVTKALSTLANEVKPDANNPRCPHCKLYFKNSGAL
STHIKWNHEDCQSSSSKNSDDHSGSRSSPTQQKDKQYSDNDNKDLTRKPNRIGVHNPVHP
KPKLEKTKSKSEKLKVEATNDKGRQDLKSLPVTTETEDSTVRPRLYQCELCEEIFSVQCF
FKAHMASHKRAAENGGER
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtattagctgaatatgaagcttctcttgctgaattaacattcaacagcaaa
cctcatataaatatgctgacagtgcttgcagaggaaaatgtaaaccatgcttcagacatt
gcacttatcataaagtctcagctctaccaggttcctcttaaaagaaaactgcccgtcctg
tatttgatggattcaatcgtcaaaaactttggaggacgatatcggaagctctttagccac
agtttggtggagatttttttgaatgtatttgaaaaggccgacggaaaaacccgtggtgac
ttatacaaactgaggtcaacatgggacaccacgtttccaccacaagttttgaaggagctc
gatatagcagttcgtggagttgaccataactggccaatgagatccaaaaagcattcgcga
tccaaaaaccctcttggtcttggccacaactctagttttgataaagtatctgatgatgaa
ttgaaatatggagagtcttctcggcgtctcagtgaagcagatcaatccacagaagttgag
gagttggtggaagaggaagagattgaaatggatgatgagagcttgggtgtgcttgaaatg
ttggaagagaagttgcggaaacgacaagcagagttgacaaggcttgagtatttagatgca
ggaacaacaagtcctgatgtttaccaaccaccagaaaacgtcaaaaaagatgaaaccaga
aaagcatcgatcagcgaggacgaagatttagctcctgttagccactggatggcacactca
agcagttttgaaccgaagaaacgaacattagatgatcttgaccgcatcaccagaggaaga
gtcatctcacatttcaccgaggatgccacgaaaattccagttgatacaaaacaagaggtt
gaaccaccagttgtaaattctaaaccacaagtcaaaatgcaagaagtttgtgtacaaaca
gaagaaaagataaatgtggatgcatcagtgcaaaacacactggaatgcaaggatgaaagc
acacaatacagatttcgtcggaagacaaaaaacttcatgtctcaatacaaggttcctacc
aagaccataggtacttacttcaaggtgaaaacgaaggactcagcttcccagtatgaacct
ccattacccattcaagatactgctgcagatagcacgtgcttgcctttggatgatgagcct
ttagtaaaagatgaacagtgcagatcgaaattgtcaagaaaacatcatgcgctcatggtg
ctgcaatcactaagcaggcaacaagacttgggaatgttgtgtgacattacattggctgcc
caaggtgaactgttcaaggcacacaaagttatcttggctgcatgcagtgattttttccat
accttgtttgcttctgaagaaattagacagactccactaagctatattgaactccaggga
ataacagcttctgcactgaggttggtccttgattacatttacacctctgaagtttctgtt
ggggacagtataaagaacacccaggagatcatcactgctgctaagagacttaaaattaac
agtttacttccagcatgtaatgcccttgaacaggctttgctttctgaccaagatttgtca
ggtttggtcatatcaaacacagagttagtttttcccaattcgaagataaattacggaaac
tctggctcttttatgcactctagtgatgagacatcttctttagaatttgtgcagaaacca
catattaagagagaacatgggatctatgatgatacagacagcccagtttctccagaattg
aaaccaatcataaacgaaacatatgaagctcccaactctctaaagcacaaactttctgaa
actaaagttaaagaaaaagcggtgaagcggaaagagagaagtcagtcatgcgtagaggtt
tccacgacagtgaaaagaaggaaatcggaagatactgtaaaaccttattcctgcaattcg
tgccacaaaaccttctggaaagagaaatccttgcactcacatcgagccaaatctcatcca
aatcttactcttggccaagtcaccaaagctctatcaacacttgcaaatgaagtaaaacca
gatgctaacaatccaagatgtccacattgcaaactctatttcaaaaacagtggtgctctt
tcaacgcatataaaatggaaccacgaagactgccaaagttcctcttccaagaacagtgat
gatcattctggatccaggtcgtcacccacacagcaaaaagacaaacagtacagtgataat
gacaataaagacttaactcgcaaaccgaaccgcattggtgttcataacccagtacaccca
aagcctaaactggagaaaaccaagtccaagtcggagaagctcaaagtagaagctacaaac
gacaaaggaagacaggacctaaaatcactgccagtaacaacagagacagaggactcaaca
gttcggccgcgtttgtatcagtgtgaactttgtgaagagatattttcagtacagtgcttt
tttaaagcccacatggccagtcataaacgtgccgctgaaaatggcggtgaaaggtga
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