Ciona intestinalis (yellow sea squirt): 778547
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Entry
778547 CDS
T01056
Name
(RefSeq) transcriptional regulator ATRX homolog isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778547
03036 Chromosome and associated proteins [BR:
cin03036
]
778547
Transcription factors [BR:
cin03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
778547
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
778547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ADD_ATRX
ARMET_C
Motif
Other DBs
NCBI-GeneID:
778547
NCBI-ProteinID:
XP_002129254
LinkDB
All DBs
Position
14:complement(613032..638852)
Genome browser
AA seq
1901 aa
AA seq
DB search
MENECVVVEPEGLPKDKFIGPEFSTYICSQTGSKKRTVNSRGSSNHAAGTTEPSILDKVI
RCTGCGEQILTHLSSNANEHPVLHVLLCKRCYSYYHSGTFQKDENGIDEFCRWCGDGGDV
IMCDSCTNVFCKTCIRRNFSRKKANEIFTSDTVQCFVCDLTPLQSLIQECKEVLEAFNTN
RAPVVVKKKHRRAAIEENKSNGVIPSPETTTTIKKIDHPVVGRHKTTDTVNISNIRSECM
TIVDDTCSKVGELHSLFKQVFSNDTEDQRKVALTKLRTINQIKSKLNDLVGLSSDFYESV
CKEEKQLQARISHESTDDSMTTSKETDDLDSTNTNLSTPSRKKKLLKRKFRENILRNSNS
PAGKTWRKLHMDESQEDKSNNEASDKELSKYIPIKLKLDDQCSDKQALGGVSVSDIFHEE
ASDSDCSGLFKPRKIKRQSSNKSDSQKKESPVEKKIKKGGKNDKEAEDQSPGAKTTSSDL
DELIPKKKKKEKEASDSENSDPESLEKPSTKKKTDQKKEKPKIHKTDRPSLDFSSDSSQT
EIESNNMETFSDDQLDMTIEDQAPKVDPPPKEVSENDAARAGIQKIMEDEMSESSLDEDV
KDLLDQKKDGDKKHETKKKDENDPQDAAKEQDDAKEDGSDDAQSGGDESTKKTKIKNALL
REALSPTKDSSTRGSAKRKLSDAAVKATPRSKKVRRSLICDEALIGSNLNEEDKQILLNK
DANDDGDLSDLSNILQSSDADVTDVNEDPQTDEKNASDCSHSTKLSTTSSERLQVVVGKE
EKEKCEAALQEKGKGGSKEEKEKGEEKKSEEEKSENEKSDVEDKNKEKKEEKKEERENKI
KEEVLKSDAEMECITIESDSHDENVGSKSKKITSMSSDSDEDVGFKPKKKQKGQTWLDDF
YKVEDVSDDGVGSIKKEAQTRSYNKVKKRRRIKDSGSEDSNKDSMDDFHDSGKKMGRRNI
RKILDNTNLSKMTQDAEKMEKARRKRLEQDQDLEEEVIIIDDEASPQKKKKVTTHLVLSK
KPLVEVESAILRALKPHQVEGIKFLWRNVIESVARANKSRGDGCILAHCMGLGKTLQVVA
FLHTVLHSPHLPKQRTALVVCPLGTVLNWAREFDMWTRPCKQSMETYSIMDNKSLHDRAI
ILKRWHKRGGVLVTGYKMFMTMVTITRKQYSRYNKSFIEMMLDPGPDIVVCDEGHIIKNE
ATNLSNVMSRIKTRRRLVLTGTPLQNNLMEYYCMVNFIKPRLLGSAQEFNNRFTHPIRNG
QHVDSTERDVKLMKKRSHVLHELLAGCVQRKDVNCLREQLMPKHEYVLFVRLTPVQIRLY
EQYLSTFQCGDVGNRKGQLFQDFKNLLLIVCHPKALLLDKIRRENQQNAEEAREDIRSFL
NDEDETSEEDLEGEEPPSDDMSKISSMSVQDLKKLILSKGGSLQDCLEKKDLLQRAKDLL
TTSATDDPTKELWFEKVMPSDNLLYDSVEMSGKITLLLSILKSSTMMGDKVVLFSQSLLT
LDLIEDILRYVTMDGSDNTRSPTGVRIMKWYKDVDYYRMDGSTKNERRKTIIDQFNNESD
TRCRLMLVSTRAGGIGINLVGANRAIVFDASWNPTHDVQSIFRIYRFGQTKPCYIYRFIA
QGTMEEKIYDRQVVKQSLASRVVDEQQIERHYTANDIAELYTFKPERLTKETIKSRPTPI
KPKDQLLSDILLDPKSRDLIVSYHEHDSLLGHQADEELSEADRRNAWDEYDRERFPPVPH
DSPLLKLGIATIKQLIDIAEKELEKNTKQLDNCKPETLDQIMLKVKYLNRSLKIEHAEKC
AHEIQLYKLSVRPQIERTRSYILRKLEQLRFCQQRVKASNVNPRVQNQPNGLYNLPPYVP
RPNPQSSTFRPPHPNYPRNFAQHQQFYPRNPRFSSFTHVPR
NT seq
5706 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgaatgtgtagtcgttgagccagaaggtttaccaaaagataagtttattgga
ccagaattttcaacttatatttgctcacaaactgggtcaaagaaaagaacggttaacagc
agaggttccagcaatcatgctgcaggtacaaccgaaccttcaatattggataaagtgatt
cgttgcactggttgtggggaacagattcttactcatctatcaagcaatgccaacgaacac
cctgtgctacatgtactcttgtgcaagcgatgctattcttattatcactctggtacgttc
caaaaagatgaaaatggaattgatgaattctgtcgttggtgcggggacgggggggatgtt
atcatgtgtgatagttgtaccaatgtattttgcaagacttgcattagacggaacttcagc
cggaaaaaagcgaatgaaatatttacttccgatacagtacaatgttttgtatgcgatctt
acacctttgcagtcacttatacaagaatgcaaagaagtcttggaagcctttaatacaaac
agagcacctgtagtagttaaaaagaaacacaggcgagcagcaattgaagaaaacaaatca
aatggtgtcattccgtcaccagaaactacaactactataaagaagattgaccatcctgtt
gtaggccgccacaaaacaacggacaccgttaacattagtaatattcgttctgagtgtatg
acaatagtagatgacacgtgcagtaaagttggtgaacttcactctttgtttaaacaagtg
tttagcaatgacacagaagaccaaagaaaagtggctttaacgaagcttcgaacaatcaac
caaattaaatcaaagctgaatgacctggtgggcttgtcatccgatttttatgagtctgtc
tgcaaagaagaaaaacaacttcaagcaagaatatctcatgaaagcacagatgactccatg
acaaccagcaaagaaacggatgatttagattccactaacaccaatctctctacaccaagc
agaaagaaaaagttgctaaaacggaaatttcgggaaaacattcttcgtaactccaactct
cctgctggtaaaacatggaggaaattgcacatggatgaatcgcaggaggataaaagcaac
aatgaagcgtcagataaagaactatctaaatatattccaatcaaactaaagttggatgac
cagtgttctgataaacaggcacttggaggggtaagtgtcagcgatatcttccatgaggag
gcgagtgattctgattgctccggactttttaaaccacggaagataaaaagacaatcctca
aataaatctgattcacaaaagaaagaatcgccagtcgaaaaaaagattaaaaagggaggt
aaaaatgataaagaggcagaagatcaaagtcctggagcaaaaacaacctcatctgacttg
gatgaactaatacccaagaagaaaaagaaggaaaaagaagcttctgattctgaaaattct
gatccggaaagtttggaaaaaccgagtacaaaaaagaaaactgaccaaaaaaaagaaaaa
cctaaaatccacaagacggatcggccatctttggatttttcatccgattcctctcagacc
gagattgaaagcaacaacatggaaactttctccgatgatcagcttgacatgacaattgaa
gatcaagctcccaaagttgatccccctcccaaagaagtaagtgagaatgatgcagcaaga
gctggcatccagaagatcatggaagatgagatgtccgagagctccttggatgaagatgtg
aaggatctgttggatcaaaagaaagatggagacaaaaaacatgaaaccaagaagaaagat
gagaatgatcctcaggatgctgcaaaagaacaggatgatgcaaaagaagatggttcagat
gatgcacaaagtggaggagatgaatcaactaaaaaaacgaagatcaaaaatgcattgctt
cgagaagcactttcaccaacaaaagatagctccacgagaggttctgccaagagaaagtta
tctgatgctgcagtgaaagccacaccacgtagtaaaaaagtacgaaggtctctgatttgt
gatgaagctctcattggttcaaaccttaatgaggaagataaacaaattctcctcaacaaa
gatgcaaatgatgatggtgatctctcggacctaagcaacatccttcaatcttcagatgcg
gatgtaactgatgtaaatgaagacccccaaacagatgagaaaaatgccagcgattgtagc
cactccacgaaattatcaacaacaagttccgaaagattgcaagttgttgttggaaaagag
gagaaagagaagtgtgaggccgctcttcaggaaaaagggaaaggtgggagcaaagaagag
aaagaaaagggtgaggagaaaaagagcgaagaggaaaaaagtgagaatgagaagagtgat
gttgaagacaaaaataaagagaaaaaggaagagaaaaaagaagaaagagagaacaaaata
aaagaagaagttttaaagagtgatgcagagatggaatgcatcacgatagagagcgattcc
catgatgaaaatgttggaagcaaatccaagaagatcacatcgatgagtagcgactctgat
gaggatgttgggtttaaaccgaaaaaaaaacagaaaggtcaaacgtggttggacgatttc
tataaagtagaagatgtttcagatgatggtgttggttctattaaaaaagaagcccagacg
cggtcgtacaacaaagtaaaaaaacgacgtcgaataaaagattctgggagtgaggattca
aacaaagacagcatggatgatttccatgacagcgggaagaagatgggtcgtcgcaacatc
cggaagatcttggataatacgaaccttagtaagatgacacaggatgcagagaagatggag
aaagctaggaggaagaggttggagcaagatcaggatctggaggaggaggttattataatt
gacgacgaagcttctccacagaagaagaagaaagtgacgactcatcttgtgttgtctaaa
aaaccacttgttgaggttgaatctgcgattttacgagccctcaagccccaccaagtggaa
ggaataaaatttctatggcgtaatgttattgagagcgttgcacgtgccaataaatcaaga
ggagatggctgcatactcgctcactgtatgggcttgggaaaaacgctgcaggttgtagca
ttcttgcacactgttcttcattcaccacacttgcctaaacaaagaacagctctagttgtg
tgcccacttggtacagtgcttaactgggcaagggagtttgatatgtggacacggccatgc
aaacaatcaatggagacctatagtataatggacaacaagtctttgcatgatcgtgccatc
atactcaagagatggcacaaaagaggaggtgttttagtcactggttataagatgtttatg
accatggttaccatcactaggaagcaatattcgcgttacaataaatccttcattgaaatg
atgttggatccgggtccagacattgttgtttgtgatgaaggtcatattattaagaatgaa
gcaacgaatttaagcaatgtcatgtcgcggatcaagactcgacgtagattagttctcaca
ggaacacctttacaaaacaaccttatggaatattactgtatggttaattttattaaaccc
agactgctcggcagcgcacaggagtttaacaatcgattcactcacccgatacgcaacggg
caacacgtggattcaacggaacgcgacgtgaaactcatgaagaaaaggtcgcatgtcttg
catgaactacttgctggttgcgtgcaaaggaaagacgtaaactgcttacgagaacaattg
atgccaaaacatgaatacgtgctttttgtccgtcttactcccgtacagattcgtttatac
gaacaatacctttcaactttccaatgtggggacgtgggaaacagaaaaggacaacttttt
caagatttcaaaaacctcttattgattgtgtgtcatcctaaagctttgctgctggataaa
attcgccgcgaaaatcaacagaatgcagaggaagctcgtgaagatattcgatctttcctt
aatgatgaggacgagacatccgaggaggacttggagggtgaagaacctccatcggatgat
atgagtaaaatatcatccatgtccgtgcaggatttaaagaaactaattctttcaaaagga
ggtagtttacaagattgtttggaaaagaaagatttacttcagcgagctaaagacctgcta
actacttctgcaacagacgaccccaccaaagaactgtggtttgaaaaagtgatgccgagt
gacaacttgctttatgattctgtggaaatgagtggcaagataactttgctattaagcata
ttaaagtcttcaacgatgatgggcgacaaagttgttttattttcccaatcattgctaaca
ctagatctcattgaagatatccttcgttatgttacaatggatgggagcgataacacacgt
tcaccaactggtgttcgaataatgaaatggtacaaagacgttgattattatcggatggat
ggttctacaaaaaacgagcgaagaaagacgatcattgaccagtttaacaatgaatcggac
actaggtgtcgcctcatgttggtttccacaagagctggaggtattggaataaatctggtg
ggggcaaacagagcaatcgtgtttgacgcgtcctggaacccaacacacgacgtccaatct
attttccgcatctatcgttttggacaaactaaaccatgttatatatatcgcttcatcgcc
caaggaacgatggaagaaaaaatctatgatcgccaggttgtgaagcaatctttggcatcc
agagtggtagacgagcagcaaatagaacgtcattacacggcaaacgatattgcggaactt
tatacttttaaacctgaacgcttaacgaaagaaacgatcaagtcacgacctacgcccatc
aaaccaaaagaccaattgttgtcggatatattattggatcccaagtcacgtgatctgatt
gtatcgtaccacgagcatgattcgttgttgggacatcaggctgacgaagagctaagtgag
gcagatcgacgcaacgcatgggacgagtatgaccgtgagagattcccccccgttccccac
gatagtccgctactaaaacttggtattgcaaccattaaacaactgatcgacattgctgaa
aaagaacttgagaaaaatacaaaacaactggataattgtaagccagaaacactggaccaa
atcatgctaaaagtgaagtatttaaaccgatcgttgaagatagaacacgctgagaaatgc
gctcatgaaatacaactttataaactttctgttaggccacaaattgaacgaactagaagt
tatatactacggaaattggaacagctgcgtttctgtcagcaacgggtaaaagcgagtaat
gttaacccaagagtgcaaaaccaaccgaacggattatacaacctcccaccctatgttcca
aggcctaacccacaaagttcaacgttcagaccaccgcaccctaattacccaagaaacttt
gcccaacaccaacaattctacccaagaaacccgcgtttttcttcgttcacacacgtcccg
cgttaa
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