Ciona intestinalis (yellow sea squirt): 778562
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Entry
778562 CDS
T01056
Symbol
cdx
Name
(RefSeq) transcription factor protein
KO
K09312
homeobox protein CDX1/4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778562 (cdx)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ANTP: HOXL
778562 (cdx)
BRITE hierarchy
SSDB
Ortholog
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GFIT
Motif
Pfam:
Homeodomain
Homeobox_KN
HTH_NDX
Motif
Other DBs
NCBI-GeneID:
778562
NCBI-ProteinID:
NP_001071669
Ensembl:
ENSCING00000007334
UniProt:
Q4H3T1
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All DBs
Position
14:3386112..3390737
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AA seq
394 aa
AA seq
DB search
MLCYAIDQQKSSIGQPTNMYRNPTPDPNPSPTSNQGFFQTYPPKEDHGRYPVPNYGIPQP
HASTADPFYPSSLGGEYGSQFPAPPPPHLDAANWGPPVTYSGANFAPMMNSTWDMNSNFH
PTHHPIISSAGPTYQLPTNLSPTSAVNGDGSPGSVPTTLTGIECFSTPPEMHGAPGLPPL
HASQIPPAQRRPYEWISKNAYQNTQTQQVGKTRTKDKYRVVYSDHQRLELEKEFRFSRYI
TIRRKAELAGLLCLSERQIKIWFQNRRAKERKATKKTGEPSKDFDKDEAEAADDDVTDHP
MTSSPIQHMQSGCQYIPPDLSRDHGILESRDGGIAHASFYEMPPHGTMNYTQLNPMDIKP
IIPTEAHRSLSSTSDDVTHGQPVMTSSHGNGNDV
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgttatgttatgcaattgaccagcagaaatcaagcataggacaacccactaacatgtac
cgcaaccccaccccggacccgaacccatcccctaccagcaaccagggatttttccaaact
tacccaccgaaagaagaccacggcagatatccggtacctaactatggtatcccccaaccc
cacgcttcaactgctgatccattttaccccagcagtttagggggcgagtatgggtcccag
tttccagccccaccaccgccccatcttgacgccgcaaattgggggcctcccgtgacgtat
tcgggggctaattttgccccaatgatgaattcaacatgggacatgaattcaaactttcat
ccgacccaccaccctataataagcagtgcaggaccgacataccaacttcctacaaaccta
tccccaacatcagcggtgaatggcgacgggagccccgggtcggttccgaccactttgacg
gggattgagtgcttctcaaccccgccggagatgcatggagcgcccggtctacctccgctg
catgcgtcgcagattccaccggcacagcgaaggccgtatgagtggataagtaagaacgca
tatcagaacactcaaacccagcaagtaggtaaaacgcgaactaaggacaaatacagagta
gtgtattcggatcatcaaaggctcgaactggaaaaagagtttcgttttagtcgttacatc
acgatacgacgaaaagctgagctcgccggactgctttgcttaagcgaacgtcagatcaaa
atctggttccagaaccgcagagcaaaagaacggaaagcgacgaaaaaaactggcgaaccg
tccaaagattttgacaaggacgaagctgaagcagccgatgatgacgtcacggatcaccct
atgacgtcatcgccgatccagcacatgcagagtggctgccagtatattccacccgattta
tctcgcgatcacgggattttggagtcgcgagatggcggtatagcgcacgcgtcgttttac
gaaatgcccccgcacggaacaatgaactatacgcaactgaatccaatggatatcaagccc
atcattccaaccgaagcccatcgctctctctcgtccactagcgatgacgtaacgcacggg
caacccgtgatgacgtcatcacacggcaacggaaatgacgtttga
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