Ciona intestinalis (yellow sea squirt): 778606
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Entry
778606 CDS
T01056
Name
(RefSeq) homeobox-containing protein 1 isoform X2
KO
K24885
homeobox-containing protein 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778606
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
778606
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
CUT
SurA_N_2
SurA_N_3
Motif
Other DBs
NCBI-GeneID:
778606
NCBI-ProteinID:
XP_002121071
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Position
1:2778375..2791406
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AA seq
523 aa
AA seq
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MRDTRLSPHPEEMGEPDPPKFTVNQILLLQKLKQSGLTKSQIIKGLDEMERFDDVGLGSP
GASVSSSTQQVPNGNSPSSVGSTNSGNTVTSCANAGARRNSTSPQSPHLPVKTNTVIPHP
QPIPNHLMFGAHMQNASQLSLIPPVAAWPNTSQAVAVATAASILQNGFAHGNVPHSVYPS
LINGRGLLQRGPAMSGTGSTVVEVDGEKIDITEELEDLFRRDQASVKEDIRKFISERHIS
QSAIAKATRNAISQSYISQWLAQPQDISGQKKKAMYTWYIVERRKPPGLTNGMSSVPPVV
FRHNEIENDCISPMMMKSKRGARFTWPKECLSILENYYNANSYPDECKREEIAHACNAII
QSQKPGSMLTELDKVTTVKVYNWFANRRKDDKRRRHIEHVEAMDQHHLIMSPRRNSATSP
SPSCHSNDSSQGVESNERNYSSFPLPIPPQCMVIPKKENPMQLALEMAAVNHSIMALVNP
HQVDDPMREDEEDDLGESSSEEIQRPEERRPFERLPDNRSYAG
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacactagactctcgccccatcccgaagaaatgggggaaccggacccccccaag
ttcacagtcaaccagatccttctcctgcaaaagttaaagcaaagtggtctcaccaagtcg
cagattataaaaggacttgatgagatggaaagattcgatgatgtgggactcgggagccca
ggagcaagcgtatcatcatccactcagcaagtaccgaacggcaattcccctagcagtgta
gggtcgactaacagtggcaatacagtgacatcatgtgctaacgctggagcacgacgcaac
agcacaagtcctcagtcgccccatttaccagtaaagacgaatacagtgattcctcatccc
cagcctatccccaaccatttgatgtttggagctcatatgcagaatgcaagccagctctcg
cttataccgcctgttgctgcgtggccaaatacgtcacaagccgttgccgtagcaacagca
gccagtatcctgcaaaacggttttgctcacgggaatgtccctcattctgtgtatccgagc
cttatcaacggcagaggacttcttcaaagaggacccgcgatgtcgggaacagggagcaca
gtcgtagaagtggatggtgagaagattgacatcacagaggagcttgaagatctcttccga
cgggatcaagcttccgttaaagaggacatccgaaaatttatcagcgaacgtcacatttcc
caatccgcaatcgcaaaagcgacaagaaatgctatcagccaaagctacatctcacaatgg
ttagcccaaccccaagatatcagcgggcagaagaagaaagccatgtacacttggtacatc
gtggaacgtagaaaaccaccaggccttactaacggcatgagctcggtcccccctgtagtg
tttcgtcacaacgagattgagaatgattgcataagccctatgatgatgaagtcgaaacga
ggagcaaggttcacctggccaaaggaatgcctgtcaatacttgagaattattacaacgca
aactcctatcctgatgaatgtaaacgtgaggagatagcacatgcttgcaatgcgatcata
caaagtcaaaaaccaggcagcatgcttacagaactggacaaagtgaccactgttaaagtt
tataattggtttgcaaaccgacgcaaagacgataaacgtcgtcgtcacatagaacacgtg
gaggcaatggaccaacaccatctcattatgagccctcgtcgtaactcggccacttcacct
tccccatcttgtcattcaaacgacagctcacaaggggttgaaagcaacgaacgcaactac
agctcattcccactacctatccccccacagtgcatggtgatacccaagaaagaaaatcct
atgcagctagcacttgaaatggcggctgttaaccattcaatcatggcgctcgtcaacccg
catcaggtcgacgatccgatgcgagaagacgaggaagacgaccttggagaatcttcctcg
gaggaaatccaacgaccagaggagcgtagaccgtttgaacgcttaccggacaaccgaagc
tacgccggctga
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