Ciona intestinalis (yellow sea squirt): 778640 Help Entry 778640            CDS       T01056                                  Symbol hif Name (RefSeq) transcription factor protein   KO K08268   hypoxia-inducible factor 1 alpha Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin04137   Mitophagy - animal cin04140   Autophagy - animal cin04148   Efferocytosis Brite KEGG Orthology (KO) [BR:cin00001]  09140 Cellular Processes   09141 Transport and catabolism    04140 Autophagy - animal     778640 (hif)    04137 Mitophagy - animal     778640 (hif)    04148 Efferocytosis     778640 (hif)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:cin03000]     778640 (hif) Transcription factors [BR:cin03000]  Eukaryotic type   Basic helix-loop-helix (bHLH)    Factors with PAS domain     778640 (hif) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  PAS_3 HIF-1a_CTAD bHLH_HIF1A PAS_11 PAS PAS_9 PAS_2 Motif Other DBs NCBI-GeneID:  778640 NCBI-ProteinID:  NP_001071731 Ensembl:  ENSCING00000002100 ENSCING00000021869 UniProt:  Q4H3E3 LinkDB All DBs Position 4:complement(2861367..2876807) Genome browser AA seq 735 aa AA seqDB search MLSQFKDNKMLSCENEEVPPSTYRRQRRREKSRDAARCRRNKECDIFQEICDNLPVAHDV IGQLDRSALLRLVISYIKLRQALPKTMFSDSIADVISDLSIKQENPAPVISNDDYVNALN GFILIISTDYDILYASENVKEYLGLSHLDLIVQNILSYTHEGDHDDIRNCFRESEGKSLR KSFFLRMKSTLTPNGKTTNLKSASYKVLRCTGMITPSQAQSDTSAFVAHVQPIPHPSNIQ HVLDSRTFLSRHSPDMKFTYWDERMSEILDYDAEGLMGKSFYDYVHVMDAKAIANSFQKL YRLGQIETERYRFLNKNGGYHWVITQATVITGNKNQKAQCVVCIHYVIGESTETEVIFSS EQLQCARLLQIKEQEATISTQDLTLELSPNCVFDDRPLTCDVFPVNTAMPEEQQPADDDC SIVPLTFAVLDENDNLCGDDVFFNAPSIGDPWSFTSSATSVQEKLEDLFSYVAVDNLQAP QAGQEFCDMSKPQCAPLTHQLNVGKQDFTWNRGENPSAPVSPCDSAYCGSPIPLLPPFPE LEPPDERNVYQQRKRAYQNVPVSSEQYREHQENMRRGFVLNKDPAFIAKPRKRYRQESEC NRKLADMPEFVAAESKRRCYELGQATAQPTKQANNMNDFTFQQFANVLLQPGTGYGPTGN SCGGNKGGAILTSNFLLQPSADFGQANTTGRGLPRNSSGILPELSLHDCEVNAPLPGRGF FPVGVECVHALDEVF NT seq 2208 nt NT seq  +upstreamnt  +downstreamnt atgctgagccagttcaaagacaacaaaatgctttcatgcgaaaacgaagaggtgccaccc tcaacatatagaagacagaggaggagagagaaaagcagagatgcagcacggtgccgaaga aacaaagaatgcgacatttttcaagaaatctgtgataatcttccggttgcacatgatgtt attggacaattggacagatcagctttattaagattggtgatcagttacatcaaactgaga caagccttacccaaaacaatgttctctgattctatagcggatgttatatcagatttatca ataaagcaagaaaatccagctccagtcatatcaaatgatgattacgtaaatgcattgaat ggatttattttgatcatttccacggattacgacattctatacgcctctgaaaatgtgaaa gaatatctaggcctttcacatcttgaccttattgtccaaaacatactctcatacacacat gaaggggaccatgatgacattagaaactgcttccgagaaagtgaaggtaaatcactgagg aagtccttcttcctaagaatgaagagcaccctcactccaaatggaaaaaccacaaactta aaatccgcatcatataaagttctcagatgtacaggcatgattacaccaagtcaagctcaa agcgatacgtcagcatttgtggcacatgttcaacctattccccacccttccaacatacaa catgtactcgacagcagaactttcctgagccgacattcgccggatatgaagtttacatac tgggatgagagaatgtccgaaatacttgactatgatgcagaaggcttgatgggaaaatca ttttatgattacgtgcatgttatggatgccaaagccattgcgaacagcttccaaaaattg tatagactgggacaaattgagacagagcgctacaggttcctaaataagaatggtggttac cattgggtcattacacaagcaacagtaattactggcaacaagaatcaaaaagcgcaatgt gtcgtctgcatacactatgtcattggcgagtcaacagagactgaagtgattttctcctct gagcaactacagtgcgccagactgcttcaaataaaagaacaagaagcgaccatctcaacc caggacctaacactcgaactatctccaaactgtgtattcgacgaccgtcccctcacttgt gacgtatttccggttaatacagctatgccagaagagcaacaaccggccgacgacgactgc agcattgtcccgcttactttcgctgtactggatgaaaacgacaatctctgcggtgacgat gtctttttcaacgccccgtctattggagacccgtggtcttttacatcaagtgccacaagt gtccaagaaaaactggaagatcttttcagctacgtagcagtggataatctacaagccccg caagctgggcaagagttttgcgacatgtcgaagccacaatgcgcgccattgacacaccaa cttaacgttggaaaacaagactttacatggaaccgcggcgaaaacccgagcgccccagtg agtccatgcgacagtgcatactgtgggagcccaatacctttgctaccacctttccccgag ttagagccaccagacgaacgaaacgtctaccaacagcgaaaacgggcctatcaaaacgtg cctgtctcaagcgagcaataccgcgagcaccaggagaatatgcgtcgaggttttgtgctc aacaaagacccggcgttcattgctaaaccaagaaaacgttaccgacaagaatcagaatgc aacaggaagctggcagacatgcctgaattcgtggctgccgaatccaaacgccgatgctac gagcttggacaagctacagcccagccaacaaagcaagccaacaacatgaacgacttcaca ttccaacagtttgctaacgttcttctgcaacctggtacagggtacggaccgacgggaaat agctgcggcggtaacaaaggcggggcaattctaacgtccaatttcttgctccaaccgtca gcggactttggacaagcaaacacaactgggcgaggtcttccacgaaattcaagtggaatt ttacccgagctttcgctgcacgactgtgaggtgaatgcccctttaccaggccgtggcttt ttccctgtaggcgtggaatgcgtgcacgcgttagacgaagtgttctga

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