Ciona intestinalis (yellow sea squirt): 778644
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Entry
778644 CDS
T01056
Symbol
hnf1
Name
(RefSeq) transcription factor protein
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778644 (hnf1)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
778644 (hnf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
ATP13
Motif
Other DBs
NCBI-GeneID:
778644
NCBI-ProteinID:
NP_001071734
Ensembl:
ENSCING00000007645
UniProt:
Q4H3D7
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All DBs
Position
12:complement(2911784..2925204)
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AA seq
454 aa
AA seq
DB search
MARHNIPQREVVDSTGLNQSHLSQHLNKGTPMKNQKRGLLYAWWTKKQDEVAAQFKIARS
GMGAEQVEEAAGVSPRARRNRFKWGPASQRILYEAYQHQRNPTKEEREELVKKCNRAECN
QRGVSPSHANGLGSNLVTEVRVYNWFANRRKEDAFRHKLAQDSYLGDQDPCQPSEGSPEH
NGPPSKVQIMEQFPKAEPGLYGEQRDHEINRDLIKVEAHDRSHVPTPHATQNISLVTPSE
ASDSAQRIAQTSLPVVRSSRINQGCRSRAPPGVVITNLPLPDDLQRSDNFSSVSHFGALP
SVNTLSPIMNSVFQVQQPSSSQEIDPAQMQSSLPPHSLLLSGIIASVSQAPTGQHMPVFT
PLTPGHVVHEHHPLAVTQLHNHSAGGYGPPPTYHSNIKQDFSGYQQGTLAYTLTEQRRDP
SISVQDVNSSQSTSLVLSNATVDTPTIVYQQPVN
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggcacaacattccacaacgagaggtggtcgattccacaggtctaaaccaaagt
catttatcccaacacctaaacaagggaacgccaatgaaaaaccaaaagagaggattactt
tatgcctggtggactaaaaagcaagacgaagtcgctgcccaattcaaaattgctcgaagt
ggtatgggagctgaacaggttgaagaagccgctggagtgagcccaagagcgcgcagaaac
cgttttaaatggggacccgcttcgcagagaatcctatatgaggcgtaccaacaccagagg
aatcctaccaaagaagaaagagaggaacttgttaagaaatgtaaccgtgctgagtgcaat
cagcgaggtgtatcgccttcacatgcaaatggcctgggttcaaatttggttacagaggta
cgagtgtataactggttcgcgaaccgtagaaaagaagatgcatttcgacataaacttgca
caagactcttacttgggcgaccaagacccttgccaacctagcgagggttctcctgaacat
aatggaccaccgtccaaagtacaaatcatggaacagtttccaaaagctgaaccaggacta
tatggtgaacaacgagaccacgagataaaccgtgaccttataaaagtggaagcacatgac
aggagccatgtgccgacgccacacgccacgcagaacatttccctcgtcacgccatccgag
gcctcggactcggcgcaacgaattgcacaaacttccctaccagtagttagaagttcacgc
ataaaccaaggctgcagatcacgagctccacctggagtcgtgattacaaatctcccccta
cctgatgaccttcaaagaagcgacaacttctcgtcggtctctcactttggtgcactacct
tcagtgaatactctatctccaatcatgaacagcgttttccaagttcagcagccttcgtct
tcccaagagattgatccagcacagatgcaatcttctttacccccgcatagtctattgctg
tctggaatcatagcttcagtgagccaagctcccactggtcaacatatgccagtcttcaca
cctttaacgcccggtcacgtagtacacgaacatcacccgctcgcagtgacccaacttcat
aaccattcagcaggcgggtacggaccaccgccaacctatcattctaacattaagcaagac
ttcagcggctaccaacaagggactttagcgtacactcttacggagcagagacgcgacccg
tcgatatccgtgcaagatgtaaactccagtcaatctacttcattagtgttgtcaaatgct
acagtggacactcctacaattgtataccaacagcctgtcaactaa
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