Ciona intestinalis (yellow sea squirt): 778656
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Entry
778656 CDS
T01056
Symbol
irx-a
Name
(RefSeq) transcription factor protein
KO
K24889
iroquois-class homeodomain protein IRX
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778656 (irx-a)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
778656 (irx-a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
MRP-S32
Motif
Other DBs
NCBI-GeneID:
778656
NCBI-ProteinID:
NP_001071746
Ensembl:
ENSCING00000018956
UniProt:
Q4H3A8
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All DBs
Position
11:1444181..1452919
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AA seq
567 aa
AA seq
DB search
MSFLPFPVAFSSNPSMTSRTSLSEAQATISDPGRSGLTEQRSPDNGVHFPAEARGIPGRP
TDIASALFGLPYTAQVAHGRLVPPVYPALPPGIDSAALQSTLSRMDPKDFPSWGNPLHPG
PFYPYDPTLMYQHSGYGPMGLSDGARRKNATRETTSTLKAWLNEHRKNPYPTKGEKIMLA
IISKMTLTQVSTWFANARRRLKKENRMTWSPRNRCGEEENERESDEEERGEMREEGNSPN
EMRRTEPRDSDNSNPGTNLSGSNSDLAYQRHQRAHQQQMFLRHLASLPPHLRPVDPFRHF
QLHNQRLATQGMHLLPGNSRSNDHVGALKHDQQRRSSLSSPSASASSYDRSPSPVNQPRN
FRPPPPLNQITSPSKSPSHRFRFSPEPTERGSDEENKKTEARDSKKEKIWSPVSLTETTD
KPRSITSRDSPPTPRHTIESPVGKSPSNPLAVAQAWMEEYQRHLATRNPQLLASTLASIA
AKRGSSGGFPFLPFQSGPQSAVSVTSRMESMETSRDDDSLTSDTEAGPNLPMNLSKNKDR
GNHSNDDVPLVIDDVERKPLMRSIVAS
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttcttccttttcccgtcgcgttttcctcaaacccaagcatgacgtcacgaacc
tccttgtccgaggctcaggcaacaatttccgaccctggtagatcagggcttaccgagcaa
cgtagcccggacaacggagttcattttcccgccgaagcccgtggaattcccgggcgcccg
actgacatcgcttcagcgctatttggtctcccatataccgcccaggtcgcacatggacgg
ttggtgcctcctgtttacccagccttgccaccaggcattgactcagcagcattacaatcc
acactcagtcgaatggacccaaaggatttcccatcttggggaaacccccttcacccaggc
ccgttttacccctacgacccaactcttatgtaccaacacagcggatatggaccaatgggt
ctcagcgacggtgctcggcgtaaaaacgcaacccgagaaacaacatcgacgttaaaagcg
tggcttaatgaacacagaaagaacccttacccaactaaaggggaaaagatcatgttagct
attatttcgaagatgacgctaacgcaggtttcgacctggttcgcaaacgcgcgtcgtcga
ttgaagaaagaaaacagaatgacttggtctcctcggaacagatgtggggaagaagagaat
gaaagagaaagcgatgaggaagaaagaggagaaatgagagaagaagggaattccccgaac
gagatgagacgaaccgagccacgtgacagcgacaacagtaacccgggtacgaatcttagc
ggaagcaactctgatcttgcttatcaacgtcaccagagggcgcaccaacaacaaatgttc
ctacgtcatcttgcctctctaccgccgcacctgcgaccagtcgaccccttccgacatttc
cagcttcacaaccaaagactcgcaactcaggggatgcacctactaccgggaaattcccgc
tccaacgaccacgtcggtgcgctgaagcatgaccaacaacgaaggagcagtttaagctct
ccctcggcatccgcatcgagctacgaccgatcgccgtcacctgttaatcaaccacgtaac
ttccgcccgccaccccccctgaaccagattacgtcaccatccaaatcgccgtcgcatcga
ttccgcttctctcccgaaccaacagaacgcggctctgatgaggagaacaagaaaaccgaa
gcccgcgactccaaaaaggagaagatttggtcgccagtctcgcttaccgagaccactgat
aaaccacggagtatcacatcccgggattccccacctaccccacgtcacacaatagaaagc
cctgtaggaaaatccccttctaacccactggctgttgcccaagcttggatggaggaatac
cagcgccacctagcaacgaggaacccccaacttctagcttcgacgttggcgtccattgcc
gcaaaaaggggatcctctgggggatttccctttttgcccttccagtcgggtccccagtcg
gccgtttctgtgacgtcacgaatggaatccatggagacgtcacgtgacgatgactctctg
acgtcagacacggaagcagggcctaacttgcccatgaatctatcaaagaacaaagatcgt
ggtaaccatagcaatgatgacgtacccctcgttattgatgacgtagaaagaaagccactg
atgcgatcaattgttgcaagctaa
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integrated database retrieval system
