Ciona intestinalis (yellow sea squirt): 778657
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Entry
778657 CDS
T01056
Symbol
irx-b
Name
(RefSeq) transcription factor protein
KO
K24889
iroquois-class homeodomain protein IRX
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778657 (irx-b)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
778657 (irx-b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
778657
NCBI-ProteinID:
NP_001071747
Ensembl:
ENSCING00000021438
UniProt:
Q4H3A7
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All DBs
Position
11:1407929..1411982
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AA seq
570 aa
AA seq
DB search
MDARLVAARLPGFPMYQPPYATPTFPGYLHYNPAAAAAVAAATDPAAFYPPIGPGENADA
WRAGLSQAAAAAYYDPSMAAHYGGCYGYGPMGLSDGARRKNATRETTSTLKAWLNEHRKN
PYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWSPRNRCGEDDDEDDLADDA
GNHGNTSRSSSPVGGAEDVDMRRGDFGRFEASGGDLSDGAFSDGRDERRAGKEEDRRKSP
SSLVSRSLSNDESRSRLANGHFVKHGIHPYSNPRSSPASRPNISPPIQARPGLPFPPNMP
PMQAPSSQAPPHFHGSQFNPAAAASLIAASRGHPLPPHVMAALNEQAQRHYQQALQHMPN
YPFHGERALSTSTNASPSPSTSSRVSSTSPSTSLKPASSAETSTASTPPKPKIWSIADVA
TSRDSSKDISNRSKICHKSHSLSPPSSQSDDKDMSNVRSWVGGMLHHKLAAAMHPTNPQL
MGLSPSSQGSKVPSNGARYPQSFPRFADIVAAQQEKANAAMREMGKPHHSDDVIIMSERS
PTIHETPMEALQARRNSSHSPVSPQQSDEH
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggacgcccgactcgtcgcggctcgtctccccgggtttccgatgtaccaacccccgtac
gccaccccaactttcccgggctacctgcattacaacccagcagctgcagcagcagtagca
gcagcaactgacccagcggctttctatcccccaatcggcccgggagaaaacgccgatgct
tggcgggcaggactcagtcaagctgccgcggccgcttactacgatccctcgatggccgca
cactacggaggatgctatggatatggaccaatgggtctcagcgacggtgctcggcgtaaa
aacgcaacccgagaaacaacatcgacgttaaaagcgtggcttaatgaacacagaaagaac
ccttacccaactaaaggggaaaagatcatgttagctattattaccaagatgacgcttaca
caggtgtcgacctggtttgcaaacgcgcgtcgtcgtttaaagaaagaaaacaagatgacg
tggtctccaaggaacagatgtggggaagatgatgacgaggatgatttggcagatgatgct
ggtaaccatggtaacacaagtcggtcatcctcgccagttggtggcgctgaagatgtggac
atgagaagaggagattttgggagatttgaagcatccggaggggatttatcagacggagcg
ttctcggatggaagggatgagagaagagcaggaaaagaggaggacagaagaaaatctcct
tctagtttagtttcgagatcactaagcaacgacgaatctagaagtcgtctcgccaacgga
catttcgtcaaacatggaatccacccgtactcaaacccaaggtcctccccagcctcaaga
cccaatatatctccacccatccaagctcgaccaggattaccctttccccctaacatgccc
cccatgcaagccccaagctctcaagccccgccccactttcacggctcccagttcaaccca
gcagccgccgcctcccttatagctgcgtcacgtggtcacccccttcctccccacgtcatg
gccgcactaaacgagcaagcacagcgtcactaccagcaagcattacaacacatgcccaac
tatcccttccacggagaacgagctctctccaccagcactaacgcgagtccatcacccagt
acgtcatctagggtatcttctacgtcaccatctacgtcattaaagccagcatcatccgct
gaaacatcaactgcgtcaaccccaccgaagccaaaaatctggtcgatcgccgacgtcgct
acaagtcgcgatagttctaaggatatttccaaccgaagcaagatttgtcacaaatcacac
tcgcttagccctccttcgtcacagagcgacgacaaagatatgtcgaacgttcgatcgtgg
gttggaggtatgttacatcacaaactagcagcagccatgcacccgacgaacccacaactc
atgggactttccccttcgtcccaaggatcaaaggtcccctccaacggggcaaggtacccc
caatccttcccacgatttgcggacattgtcgcagcgcaacaagagaaggcaaacgccgca
atgagggaaatgggaaagccccaccattccgatgacgttattattatgtcagaaagatcg
cccactattcatgaaacaccaatggaagcactacaggcgagacgaaattcgagtcactcg
ccagtttcaccgcaacagagcgacgaacattga
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