Ciona intestinalis (yellow sea squirt): 778658
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Entry
778658 CDS
T01056
Symbol
irx-c
Name
(RefSeq) transcription factor protein
KO
K24889
iroquois-class homeodomain protein IRX
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778658 (irx-c)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
778658 (irx-c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
CUTL
Motif
Other DBs
NCBI-GeneID:
778658
NCBI-ProteinID:
NP_001071748
Ensembl:
ENSCING00000006449
UniProt:
Q4H3A6
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Position
3:5785851..5808141
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AA seq
697 aa
AA seq
DB search
MQSELPGLNMYAGPGGSSALTSPANYGGVPAAVGSAPGLVPPHYGSTGMDHSPYYSSLAP
AYDMKPGGTDVWGGSYGQAPPGYYPYENTFGSQYPYDRYCGVDMNDGVRRKNATRESTNT
LKAWLQEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWVPKNRSNE
NASSTDEKKIDPDDDDSNSQNQDCDDKIDADQSLDSDDSAEREVTSTNDNDVTNTPYSRD
SGVYGGEKSEDLNVSDQNDQQLGQGKDFSSTYQQPSDVGFERPAMPTDTVQRYGPTDASR
IWSPINDIGSGSSYPTKCPDNVGDSHLNLPPSFRGSYSDDQFSAISRPQQTPSAVSPSMI
SGVDLPGRIGECRYPSVQNWVDGVYHSAVPPTPDPDSTTCHPISAERRDSIDGRIEVDRL
QGVSPSSPHFQHQQFPCKQLPTQNPHLTVNDNEHYTYHERRVPTDNVGSPGNLHGQVAPP
SYQMFGFNSQLQGLGTGDYYHDERMAAQSSAEARLGYYNPQRSADPRQDMNSQQQQGRIH
NVYHPGDPKPSVLASPSSASGSSPASRQLCPGEQSLASRLVPSSYHANPGMSVSATNPST
FHGQYYQMSGDLTKRGHSHTSNTPSNNYMMVCGNGVDQRNMDATQGFQNPLNTQHNSYNR
SPLPSNSPHTELIMSPRDGDELREMQAAETLTNLSTR
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcggagctgcccggtcttaatatgtacgccggaccaggcggatcatcggctcta
acctcgccggcaaactatggcggagttcccgccgccgtaggaagtgcgcccggcctcgtc
ccaccccattacggatcaacaggaatggaccattcgccctactactcgtccctggcgcca
gcttatgatatgaagccgggtggtacggacgtctggggtggaagctacggacaagcacca
ccgggatattacccttacgagaacacgtttggaagccagtacccatacgacagatactgt
ggagtcgacatgaatgacggtgtcagacgtaagaacgcaaccagggaatccactaacaca
ctgaaagcttggcttcaggaacacaagaagaatccctaccccaccaaaggcgagaaaata
atgctcgccattataactaagatgactctgacccaggtgtcgacttggttcgcgaacgcg
cgtcgtcgcctcaagaaggaaaacaaaatgacgtgggtcccaaagaaccgctccaatgaa
aacgcgagttctaccgacgagaagaaaatagaccctgatgacgacgacagcaactcacaa
aaccaagattgtgatgacaaaatcgatgctgatcagtcccttgattccgatgactcagca
gaaagggaggtaacaagcacaaacgacaatgacgtaaccaacacaccctactcacgtgat
agtggtgtatatggaggggaaaagagcgaagacttaaatgtgtcagaccaaaacgatcaa
cagctgggtcaaggaaaagacttttcaagcacgtaccaacaaccaagcgacgttggtttt
gagcgacccgcaatgccaacagacactgtgcaaagatatggcccgaccgacgcttccagg
atctggtcgcctattaacgatattggtagcggatcttcgtacccgacaaagtgcccggac
aatgtcggagattctcatttgaaccttcctccgtcgttccgtggttcctacagcgacgat
cagttctctgccatcagtcgtccgcagcaaactccatcagcagtcagtccttccatgata
agcggggttgaccttcctggaagaatcggtgagtgcagatacccgtctgttcagaactgg
gtggacggggtataccacagcgcggtcccgccgaccccagacccggattcgacaacttgc
catccaatttcagcggaaaggagagattcgattgacggaagaatcgaagtcgatcgtttg
caaggagtgtcgccttcctcccctcatttccaacaccagcagttcccatgcaaacaatta
ccaactcaaaacccgcacctaactgtgaacgataacgaacactacacctaccacgagcgc
agagttcctaccgacaacgttggaagtccaggcaacctccatggtcaagttgcgcctcca
tcctaccaaatgtttggatttaacagccaactacaaggccttggaactggggactattac
cacgacgagcgcatggcagcgcagtcttcagccgaagcgagactgggctactacaacccc
caaagatccgccgacccacgtcaggatatgaactcgcaacaacaacaaggtcgcatacac
aacgtataccaccctggcgacccaaagccgtcagtcctcgcctcaccctcgtcggcgtcc
ggtagttcgccggcttcgcggcaactctgtcccggagagcaatcgttggcgagtcgactt
gtccccagttcttaccacgccaatcccgggatgtccgtttcggcaacaaacccaagtact
ttccatggtcaatattaccagatgagcggagaccttacaaagcgaggacactcacatacc
agcaacacaccctccaataactacatgatggtttgtggtaacggagttgaccaaagaaac
atggacgccacgcagggatttcaaaatcctttaaacactcaacacaacagctacaaccgg
tcgccattgccgtcgaatagtccccatacagagttgataatgtcgccacgagacggggac
gaactaagggaaatgcaagcagctgagaccttgaccaatctatccacaaggtga
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