Ciona intestinalis (yellow sea squirt): 778669
Help
Entry
778669 CDS
T01056
Name
(RefSeq) low-density lipoprotein receptor-related protein 6 isoform X3
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04150
mTOR signaling pathway
cin04310
Wnt signaling pathway
cin04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
778669
04150 mTOR signaling pathway
778669
09133 Signaling molecules and interaction
04519 Cadherin signaling
778669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
778669
Membrane trafficking [BR:
cin04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
778669
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
LRP1-like_beta_prop
Ldl_recept_a
EGF_LRP2
SGL
Vgb_lyase
EGF
CD34_antigen
Motif
Other DBs
NCBI-GeneID:
778669
NCBI-ProteinID:
XP_018671032
LinkDB
All DBs
Position
Unknown
AA seq
1881 aa
AA seq
DB search
MKLLFISFLYFLSSNASKDTALNAPFLLLANHVDIRLIPSGEPNNTVIVASDLKGALACD
FFFEEQHIYWIDCLNGRIQYVDMTTPQRKKMDVLVSGMVKPEGLACDWIGRKLYWTDRGT
KRIEVSELDGSHRKVLLWNNLDLPRAIAVDPHNRYMYWTDWGEEPKIERSGMDGSQREVL
INQNIYWPNGITLDYEEGKVYWIEAGHHFIHRINLDGSQREEMFSSNNDNNQLVVPPTSQ
ESSDQSRSSNSTSTNIPLSSEEGGEWVGALEHPYAITLFRDRVYWSDWRTSSLYSISKNQ
TEVPRLVKGDILSPMDLQAYNSQRQKPGPNPCGSTNGGCSHLCLLSPKPPYYKCACPTGV
QIMKDRKTCKHGPDQILLLARRTDIRMISLDTDDHTDVLLPVKTVLNAVTVDYDPVDKFV
YWTDEDRKAILRCHLNGTGSEAIITENLEQSDGMAIDWVARNLYWTDTGRNYVAVARLNG
TSRRILIETEIDEPRAIVVDPTAGYFYWTDWGENPKIERVEMDGTNRILFVRKHLKWPNG
LAIDHTHGWLYWADASLDKIERIKLDGTQRKMLVSGKIPHIFGFSILGNYLYWADWQRRR
IERMRIGDPRSREILIDQLPNLMGVKATGMTPLPGTNPCARNNGGCSHLCLYTPEGPRCS
CPTGLELAINSHQCVVPEAYLLYSLPKVGGIKEISLDTAQNDKSLPFNKPVEAYLLDFSV
DDSMVYWTNTRDMTISRAFMNGSNVERFIDIGIEILQGVAVDWIGRNVFWADAQANRIEV
ARMDGTSRRPIIWQGLDSPACIAMDPANGYIYWSEWGTDTCIKRANLDGSNVVRLTQIGD
VGRASSLTIDYEDRRIYWVDYDSNMIMSSDMEGRNLIEVINVADEPGNVISSLTLYGEHV
YWADSKQKTIQRANKLHGASRRIIETGLGSIDDMLVFHASRQIGVTSCSRDNGGCQYLCL
SLPGGNYTCECPAHYTLNLLDNSSCVAPLNFLLVSQTSYISRIVFESSEGVLGVIPGAEI
DQRAVYDENAKPTPDAVLPIKGLKDACSIDYDPIERTIYWIDCATGEIKSCRDNGTDARV
LVANRGSNGSNRPHDLAVEPYTRHLYWTDSLSNSIQMMNLNGTMIGTVLSGKLNAQGVGN
GKYIDIMPRKITIDSMKGRIYFSNTCHDTKSCRFKILQSALDGSDCIELFSHNLHNVSAM
VVDSQSKRLYWSDPDREVIEWSNTDGSHRTTLIENSISQPVGLAVFGDSIYWVDSQIDVG
VISGANKIDGSNRRIIQSRVRNLKAIAAAKLINLGDRLQHPCFTDNGGCSHICVPQVTGV
TRCSCPTHLAVIEDSKCGKPVTCGPGYFRCKTLSICIPMNWKCDSENDCEDASDEMNCET
NRLPCKDYEVECKAGDLQHRGNFLHNLVQVLPQCVNQSKICDGTYDCISQSDEMNCDCGP
NLKVCPSGQCVAVGSSCDCTNCQPIIGGNDQDNSMVIVIGIVCGCVVLLGIGLFIRHCMT
HNSRYPQGVVMFAPHTNGNCTVNVEIQSRADTTEVVNHQKTNGNQSRKKGSTKGKASINL
SFHPSGSRSGSNSRFGVPSNWQFPVHYTKDCHSMDRPCVPGASRCSSIQAKVFSPTTNPP
PSPATVRSGSKSGDRVYSTDSGRSHHRCKNGYKHRRSQHRYPIHHPPPPTPCNTDTCDDV
DRGYRHGGSNRSPPSTNSSVPHEPPPPYHHHQCCYHCYHQYPPQCRHPDGSSSSSYQCED
DDCSCGGDSLPSYPPSYNQRGRSWRRPPHRSYLSSDLNSDSDPFAPPPTPRSQYMSECCY
THGETTEADDPLDEEDETVDDDVTNDVTENLIAGSGVTEDEEGGSEDDADTVLLNPRSSP
SVTERSFRIYNPPPSPATDSS
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgctttttatttcttttttatactttttatcatcaaatgcaagtaaagatact
gctctcaacgccccttttttattgctcgcaaatcatgttgatattcgattaattccatct
ggtgagcccaacaacacagttatcgtggcttcagacttaaaaggagcattagcctgtgat
ttcttctttgaggaacagcatatctactggattgactgtcttaatggaaggatccagtac
gttgacatgacgaccccacagcgcaaaaaaatggacgtacttgtttcgggtatggttaaa
cctgaaggcctcgcatgcgactggatcggtcgaaaactgtactggacagaccgtggaaca
aaaagaattgaagttagtgaattagatggaagtcacaggaaagttttactgtggaacaat
ctagaccttccgagagctatagcagtggatcctcataacaggtacatgtactggacagac
tggggcgaagagccgaagatagaacgttctggaatggatggttcacagagagaagttctg
atcaaccagaatatttactggcctaatggaatcacacttgattatgaagaagggaaagtt
tactggatcgaagctggccatcattttattcatcgtattaacttagatggctcacagaga
gaagagatgttcagcagtaacaacgacaacaaccagctcgttgttcctccaacgtcccag
gagtcaagcgatcagagtcgctcctctaactctacatccacgaacatccctctctcctcc
gaggagggaggagagtgggtgggagctctggagcatccctacgcgatcactctcttccgg
gatcgagtttactggtccgattggaggacctcatctctttattccatctcgaaaaatcaa
accgaggttcctcgtttagtgaaaggggacatcctgtcgccaatggacctacaggcctat
aactcgcagaggcaaaaaccaggtcctaatccgtgtggttccacgaatggtggatgctca
cacttatgtctcctctcacccaagcccccatattacaagtgtgcgtgcccgaccggggtc
caaatcatgaaggaccgaaaaacatgtaaacacggtccagaccagatccttctgcttgca
cgaagaacagacattcgaatgatttcgctcgacactgatgaccatacggatgtactactg
cctgtaaagacagtgctgaatgcagtcacagtggattacgacccagtggataagtttgtg
tactggacggatgaagacagaaaagcaattctcagatgtcatcttaacggcacaggttct
gaagcaattatcacagaaaacttggagcagtcggatggcatggcaatagattgggttgca
aggaacttgtattggacagatacgggtagaaactatgtagcagtggcacggcttaatggg
acatcccggagaattcttatcgaaactgagattgacgaaccaagagcaatcgtggtcgat
ccaactgctggctatttctactggaccgactggggagaaaaccccaagatagaacgtgtc
gaaatggacggcacaaacagaattttgttcgtaagaaaacacctaaaatggccaaacggt
ttagcaattgaccacacccatggctggctgtattgggccgacgcatcgctcgataaaatt
gagcggatcaagcttgacgggacacagaggaagatgttggtgtccgggaagataccacac
atatttggattcagcattcttggcaactatctctactgggctgactggcaaagaagaaga
attgaacgaatgcgaattggtgatccgagatccagggaaatactcatagatcaacttcct
aacctaatgggggtgaaggccactggtatgacacctttaccaggaactaatccttgtgca
agaaataacgggggttgctcacatttgtgtctatatacaccagagggtccgaggtgcagt
tgcccaactggtctcgaattagcgatcaacagtcaccagtgcgtggtacctgaagcttac
cttctctattcactaccaaaagttggcggaattaaagagatttctctcgacactgcacaa
aacgacaagtcccttccattcaacaaacccgttgaagcttacttacttgatttctcagta
gatgatagtatggtgtattggacaaatacaagagacatgacaatctcgcgtgcttttatg
aacgggtccaacgttgagagattcatagatatcggcatagagatcttacaaggggtcgcg
gttgactggatcggacgcaatgtgttctgggctgacgctcaagccaatcggatcgaagtt
gctcgtatggacgggacaagcaggcgaccaatcatatggcagggattggattcacctgcg
tgtatcgccatggatccagccaatgggtacatatactggtcagagtggggcacagacacg
tgcataaaacgcgcaaatctggatggttccaacgtggtacgattgacacaaatcggggac
gttggacgcgctagttcccttactatagattacgaggatagaaggatttattgggtggat
tatgacagtaatatgatcatgtcttccgatatggaaggcagaaacttgattgaagtaatc
aatgtagctgacgaaccaggaaatgttatttcaagtttaacattatatggagaacatgtg
tattgggcagatagcaaacagaagaccatacaaagagcaaataaattgcacggagcgagc
aggagaataatcgagactggtctcggttctattgatgatatgttggtgtttcacgcatca
cgtcaaatcggtgtcacatcatgttcacgtgataacggggggtgccaatacctatgttta
agtcttccagggggaaactacacttgcgagtgccctgcccattacacgttaaatctattg
gataattcttcatgtgttgccccattaaatttcctattggtgagccagacttcatatatt
tcccgtattgtgttcgaatcctccgaaggggtcctaggggtaattcccggggctgagatt
gaccagcgagcagtttacgacgagaatgcaaaaccaacgcctgacgccgtgttacccatt
aaagggctgaaggatgcctgctcaattgactacgacccaatagaacgcacaatatactgg
atcgactgcgccaccggtgaaataaagagttgccgagacaatggcacagatgcgagagtt
ctcgtcgcaaataggggttcaaacgggtcaaatcgaccccatgatttagctgtggaaccc
tacacaagacatttgtactggacagactctctgtctaattccatccaaatgatgaattta
aatgggaccatgattgggactgtattatctggtaaactcaatgcacaaggggtgggaaat
ggaaaatacattgatattatgccaaggaaaattacaatagactccatgaaagggcgcata
tacttcagtaacacatgccatgacacaaagtcatgcagatttaagattctacaatctgct
ttagacggatctgattgcattgaattattcagtcataatttacacaacgtttcagctatg
gtagtagactcacaatctaaaagattatactggtctgatccggatcgtgaggttatagaa
tggtcaaataccgatggaagccatcgtaccacgcttattgagaacagtataagtcaacca
gttggtttagctgtgtttggtgattccatctattgggtggactctcagattgatgttggt
gtgatcagtggagcgaataaaatcgacggttcaaatcgacgaattattcaaagtcgagtc
cgaaacttaaaagcgatcgctgcagccaagcttatcaatcttggtgaccgattacaacac
ccatgtttcactgataatgggggttgttcacatatctgcgtgccacaagttaccggggtg
acacggtgttcgtgccccacacatcttgctgtgatagaagattccaaatgtggcaagcca
gtgacgtgtggtccaggttattttcgatgcaaaactttatcgatttgtattcccatgaat
tggaaatgtgacagtgagaatgattgcgaagatgcctcagatgaaatgaattgtgagaca
aatagactgccgtgtaaggattacgaagtggaatgcaaagcaggagatttacaacacaga
ggaaactttctccataacttggttcaagtcttgccccagtgcgtcaaccagtcaaaaatt
tgcgacggaacgtatgattgcatctcgcaaagtgatgaaatgaattgcgattgtggacct
aacctaaaggtgtgtccatctggccagtgtgtggcagtagggagctcatgtgactgcacc
aactgtcagccaatcattggcggcaatgatcaagacaactcaatggttatagtgatcggc
atcgtatgtgggtgcgtggttttgctcggaatcggtctttttatacgacattgcatgacc
cacaactctcgttacccgcaaggggttgtcatgttcgccccgcacacgaacggcaactgc
accgtcaacgtagaaatccagtcgcgtgccgacacaactgaagtcgtaaaccaccaaaaa
actaacggcaaccagagccgtaaaaaggggtcaacaaaggggaaagcatcgattaacctt
tcctttcaccccagcgggagtagatcggggtcaaattcccggtttggggtcccatcaaat
tggcaatttcccgtccattatacaaaggattgccattctatggatcgtccctgtgttcca
ggggcatcaaggtgttcaagcatacaagccaaggttttctcaccgaccaccaacccccca
ccctcccctgcaacagtgagatcgggctccaaaagcggggacagggtttattcaactgat
tctggaaggtctcaccatagatgtaagaatggatataaacacagaaggtctcagcaccgc
tacccaatccatcaccctccaccccctaccccatgcaacacagacacatgcgatgacgta
gaccggggttacagacacgggggttcgaatcgaagccccccatcaacgaactcaagcgtc
ccgcatgagcccccgcccccctaccaccaccatcagtgttgttaccactgctaccatcaa
taccccccacaatgtagacacccagatggcagctcgtcaagctcgtaccaatgtgaggac
gacgattgctcctgtggtggtgactccctaccatcttaccccccctcttataatcagcgg
gggcgctcctggcgaagacctccacatcgctcctacctctcatcggatctgaattcggat
tcggatccattcgcgcccccgccaaccccacgcagccagtacatgtcggaatgttgttac
acccacggtgaaacgacggaggccgacgatccattagacgaagaagatgagacggttgat
gatgatgtcactaatgacgtcacagaaaacctcattgcaggatcgggagtcacggaagat
gaggagggaggatctgaagatgatgcggacacagttttactcaatccgaggtcatcccca
tcagtaacggagcgaagttttcgcatctataaccctccgccatccccagccacagattcc
tcatga
DBGET
integrated database retrieval system
