Ciona intestinalis (yellow sea squirt): 778689
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Entry
778689 CDS
T01056
Name
(RefSeq) uncharacterized protein LOC778689 isoform X1
KO
K09168
nuclear factor I/A
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778689
Transcription factors [BR:
cin03000
]
Eukaryotic type
Other basic domains
NF-1
778689
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Gene cluster
GFIT
Motif
Pfam:
NfI_DNAbd_pre-N
MH1
Motif
Other DBs
NCBI-GeneID:
778689
NCBI-ProteinID:
XP_002119978
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Position
5:1813586..1836672
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AA seq
858 aa
AA seq
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MSAVLESATLTVTPNHSVTSQYYNDVQQSDVGQVFGEIPLAGPVSIIGRRHSLASIASKT
FNRNVKPKVPDSGFEARFDPRNTEGFPDRHHFEQQVPHEPVRRSYSAGTAGIDAIFPQAD
IQHRSWREDAYRSRGHCASVDESALSANELRNRFLHDQPHRVRSDCAVDEEAFQQQGSVF
FPQPRHSQLLQNIVGNLTASAHFTSVNSPPVASPDNFNVAVAAAAAAQRYPQFLPSSAFV
HSTTQGHQFVEDQAGYANAQNNPGTLTPRFEFGKPAEGFPGSSHVSAFPYGRHRHQSASV
APGICPSTAAMLAYDTPPYSFCSIQDEFHPFIEALMPHVKSFAYTWFNLQARKRKYFKKH
EKRMSPSEEQAVKEELLREKPEVKQKWASRLLAKLRKDIRPEYREDFVLTITGKKSVCCI
LSNPDQKGKIRRIDCLRQADKVWRLDLVMIILFRGLPLESTDGERLCKSHACGQNAGLCV
QPYHISVTVKELDLYLANYVKDEGANDDKEDSLREDICKVVGATRAFKTSGVFGVHEIYR
IAKTPIISSDIHNIGMGNSIESSSYYYASHHHDNRVPPPSPLVIRQQPGHSQTKRLKSSG
SSMSAEEVNGIESGGENDAETFYNRPPSSHHSWHGSPLQSPTIKTTRAQPDLNGGHSSVT
SPGSGGNEMLPPSTPGSTSGPVSAFPRLQGSHSSPWHPVLQQSHHFPYGATQSFYHPRQD
LKDFAQFACLSAEAAKHTPSQILSYHPHSVSHMALGQSGLSGATTRPSIHQQQTSPHDAA
AERWSHGQVENQSADYHPMLSNERLQSVVPGLNPDEALVAEDRLFPPIPGAMMDQSRNSA
GGVSSQSSNQSAPLSNKE
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctgtgcttgaatctgcaacgctgaccgtgacgccaaaccattctgtgacgtcg
caatactataacgacgttcagcagagtgacgttggtcaggtgtttggtgagatcccattg
gcaggcccagtaagcattatcggtcgtcgccactcgctggcaagcatcgcttccaaaaca
tttaaccggaacgttaagcctaaagttcccgatagcgggttcgaagctcggttcgacccg
cgaaacacggagggcttcccagatcgacaccacttcgagcagcaagtaccacacgagcct
gtccggcgaagttacagcgcgggaacggctggaatcgacgccattttccctcaggccgat
atccagcatcgttcgtggagggaggacgcttatagaagtcgcgggcattgcgcttccgtc
gacgaatccgcgctttccgcaaacgaattgcggaatcgttttctgcacgaccaaccacac
agagtaagatccgactgtgcggtggacgaagaggcatttcaacaacaaggatcggtgttt
tttcctcaaccacgacattcccaattgcttcaaaacatcgttggaaacctgaccgcgtcc
gcgcattttacttcggtcaattcgccaccggttgcttcgccagataacttcaacgtggcg
gtggcggcagcagcggcggcgcagcggtatccgcagttcctaccgagctcggcgttcgtc
catagtacaacacagggccaccagttcgtggaggatcaagcaggttacgcgaacgcgcaa
aacaatcccggcaccctgacgccgagatttgagttcggtaagcccgccgagggtttccca
ggctcgtctcacgtttcagcatttccttacggcagacatcggcatcaaagcgccagcgtc
gccccgggcatttgcccatctacagcggccatgttggcctatgatacgccaccttactcg
ttttgttccatccaggacgaatttcaccccttcattgaagcactgatgccacacgtaaag
agcttcgcatacacatggttcaacctacaagcgcgaaaacgaaaatatttcaaaaaacac
gaaaagcggatgagtccctcggaggagcaggccgtcaaagaggaactcctccgagaaaaa
ccggaggtgaaacaaaaatgggcctctcgtcttctcgcaaagctgaggaaagacattcga
ccagaatacagggaagatttcgttttaaccatcactggcaagaagtcggtttgttgcatt
ttatccaatcctgaccagaaaggaaaaatccgtagaattgattgtcttcgacaagccgat
aaggtttggagacttgacttggtgatgattatcctgtttcggggacttcccctcgagtcg
actgacggagaacgcttgtgcaagtcacatgcttgcggacagaatgctggcctttgtgtg
caaccttatcatattagtgttactgtaaaggagctggacctgtaccttgctaattacgtc
aaagacgaaggggcaaatgacgacaaagaagactcgttaagagaagatatttgtaaagtt
gtcggagcaactcgagcattcaaaacaagtggtgttttcggagtccatgagatttaccga
atcgctaaaaccccaataatcagcagtgacatacataatattgggatgggaaactcaata
gaaagttcctcgtattattacgcaagtcatcaccatgacaaccgtgttcctccccccagc
cccttggtgatacgtcagcaacccgggcattcccaaacaaagaggttgaaatcatccgga
agttccatgtcagcagaggaggttaatgggatcgagagcggaggagagaacgatgcggag
acgttttataatcgtcctccgagctcacaccactcctggcatggaagccctttgcagtct
ccaactattaaaacaactcgagcccagcctgatttaaatggtggccattcctctgttacg
tcaccgggatccggtgggaatgaaatgttaccgccaagtacgcctggctcaaccagtgga
ccagtatctgcatttccgcgcttgcaaggttctcattcatcaccatggcacccagtactt
cagcaaagccaccattttccttatggggctacgcagtctttttatcacccgcggcaagat
ttaaaagattttgctcagttcgcttgtctatctgcggaagccgccaagcatacaccaagt
cagattctcagttatcatccgcattctgtatctcacatggcgcttggtcagtccggtctc
tctggcgccaccacacgaccaagtattcatcaacagcaaacctctccgcacgatgccgct
gcagagcgatggtcacacggtcaagtggaaaaccaatctgccgactaccatcctatgctt
tcaaatgaaaggcttcaaagtgtcgtgcccgggttaaaccctgacgaggcattggtggca
gaagatcgtttatttccgccgatcccaggcgctatgatggatcagtcacgtaacagtgcc
ggtggcgtttcttcgcaatcatctaatcagagcgctcccttgtccaacaaagaatga
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