Ciona intestinalis (yellow sea squirt): 778692 Help Entry 778692            CDS       T01056                                  Symbol nfkbp105 Name (RefSeq) NFkB protein   KO K02580   nuclear factor NF-kappa-B p105 subunit Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin04519   Cadherin signaling cin04620   Toll-like receptor signaling pathway Brite KEGG Orthology (KO) [BR:cin00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04519 Cadherin signaling     778692 (nfkbp105)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     778692 (nfkbp105)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:cin03000]     778692 (nfkbp105) Transcription factors [BR:cin03000]  Eukaryotic type   beta-Scaffold factors with minor groove contacts    RHR (Rel homology region) Rel/Ankyrin     778692 (nfkbp105) SSDB OrthologParalogGFIT Motif Pfam:  RHD_DNA_bind RHD_dimer Ank_2 Ank Ank_3 Ank_4 Ank_5 Death Motif Other DBs NCBI-GeneID:  778692 NCBI-ProteinID:  NP_001071772 Ensembl:  ENSCING00000006933 UniProt:  Q4H348 LinkDB All DBs Position 7 Genome browser AA seq 1200 aa AA seqDB search MSDQSLVLHQSTRENMFPEENGEPYLEIIENPKSRGFRFRYTCEGPSHGGIPGGSSDKNK KTFPAVKICNYQGYARIVVQLVTNEENPRLHPHSLVGKQCQNGICTVQCGPKDMTATFPN LGIQHVTKKNVATILEERYIAAEMQLSSINDGFPQEVQRNIKDEDRKRIAAKAQSEAKSI DLSVVRLMFIAYLPDSNGAFTIMLKPVISDAIFDSKAPNAATLKICRMDCNAGSASGGDE VYLLCDKVQKDDIQVVFSEEDMQGNNLWEAYGSFSPTDVHRQFAIVFRTPAYKDTEIKMP VNVQVQLRRKSDNEVSESRPFTYLPNKSDLELIDRKRRKVMPDFLDHTGNGSTGGYSFNP QAAILPSSYNFSGNTGSGNTAGNGAGKVKEARRPPQKQQNPQKGPVDPSVLMMLNRIKTE PKSPSPPTTYSNFPPIAYMSPAKSEPSPPAPMSIGGSPAAQVPQEEEYLPGTRIPLPKNA RPHTGLPQMSFQNPIVLSQQQQMQQQQIQQQQQQHLQQIQQQQAYSNYSPMYSTTYGLDN TQHMVYSTPSPDYGQQIIQQLSPQEVQEYEETVMNELSTVDAGDLVDIMNVDLNHNPMPQ TTNSNIINQAYDQANILTQTNNTYGGGSGSFRGSVVDPIIPQPLSNAPLPILSQQFSQQL LELTEYDLADIESDAGAERKPKPGNNNDDEQEEDYASAYCEEQDTTDSTAHEAEPKSFST VQSDCCNVEADAAMLKMEKLSLAPSMPTKLDSLKPEKKFDSKQVETKTKGPLKRSVTSTT ASVTQALEKYAVKTMNRNSSALHDFSVTGDIRMLLVLQRHLTDVRDCNGDSVLHVAVIHD QMQVLSSLLDVIVTLNNKQNIIDAVNPQKQTALQMAVLSDNVDAVIDLLKVGADPLVLDS YGNHSIHVACRHGNADILNRLLNCKQVYDMEMDTKNFDGLGCFHLAGKASSGTRQCLGLL REFAFDVNMPDMKSRRTALHMAVEADNIVVAGCLISECDADLEASTYEGYTPLHVAASLD HCEIATLLLACGADPEASSAPPGREDGMTPLDLATSDQMRDLLNGVFMKNIKEELDNSNY SDEEDLATLDPLIRLKLCKLLNLEKSGSDWYALASRLSLDYIVPFIDTTENPTDLLLDNY MFKHGTVAGLRSALMNIGRHDAVQLLNRAATTTCVDKFDSNATEQCDSAFGSLPNQIDVI NT seq 3603 nt NT seq  +upstreamnt  +downstreamnt atgagtgaccaatctttagtattacatcagagcacaagggaaaatatgtttcctgaggag aatggagaaccctatcttgaaatcatagaaaacccgaaatcgcgaggttttcgctttaga tacacatgtgaaggtccgtcacacggtggcattcctggagggagcagcgataaaaacaaa aagacttttccagcagtaaaaatctgcaactaccaaggttacgcacgaattgttgtgcag ttggtaacgaatgaagaaaatccccgcctgcacccgcattcgctcgtggggaaacaatgc cagaatggtatttgtactgtgcagtgtgggccaaaggacatgactgccactttccccaat cttggcatacagcatgtgacgaagaagaatgttgcgaccatcttggaggaaaggtacata gcagcagagatgcagcttagctcaatcaatgatggatttccacaggaggttcaaagaaac attaaagatgaagaccgaaagcggatcgcagcaaaagctcagagtgaagcgaagtcaatt gatctttctgttgtgcgtctcatgttcattgcttacctacctgacagcaatggggctttc acaatcatgcttaaacctgtcatttcagatgctatttttgacagcaaggctccaaacgca gccacactaaagatttgtcgcatggattgcaacgcagggagcgctagtgggggggatgag gtttacttgctgtgcgacaaagtacaaaaagatgacatccaagtcgtgttcagtgaagaa gacatgcaaggaaacaacttatgggaggcttatggtagtttctcacctactgatgtacac aggcagtttgctattgtgtttaggacaccagcatataaagataccgaaataaaaatgcca gtcaatgttcaggttcagcttcgtcgcaaatcagacaatgaagtttcggagtcaagacct ttcacatatcttccaaacaagtctgatctggaactgatcgacagaaagagaaggaaagtg atgccagattttcttgaccacaccggaaatggaagcactggaggttattcattcaaccca caagctgctatccttccaagctcctacaacttctccggcaacactggtagcggcaacact gcaggcaacggggcaggtaaagtaaaggaagcacgccgacccccacaaaagcaacagaac ccacagaaagggccagttgatccttctgtactcatgatgcttaatagaatcaaaacagag ccgaaaagtccatcacccccaactacctattcaaatttcccaccaattgcctacatgagc ccagccaagtctgagccctcgccacctgccccaatgagcattggtgggtctcctgcagct caagtaccccaagaagaggaatatctaccaggaactcgaatcccattgcccaagaatgct cgtccacatactggactaccacagatgagtttccaaaatccaattgtgctttcccaacaa caacaaatgcaacaacaacagattcaacaacaacaacaacaacatcttcaacaaattcaa cagcaacaagcatattcaaactacagccccatgtattccaccacatatgggcttgacaac actcaacacatggtgtacagtacaccctcacctgactatggccaacagatcatccagcag ttaagcccacaggaagtccaagaatatgaggagacggtgatgaatgagctgtcaacagtt gacgcgggtgacttagtcgacataatgaacgtcgatctcaaccacaacccaatgccgcaa actaccaacagtaacattatcaaccaagcttatgatcaagccaacatccttacacagaca aacaacacttatggtggaggaagtggaagtttccgaggatcagtggttgatcccatcatc cctcaacctctttcaaacgctcctcttcctatattgagtcaacagtttagtcaacagttg ttggagctgacggaatatgatttggccgacattgaatcagatgcaggagccgaacggaaa ccaaagccaggcaacaacaatgatgatgaacaggaagaggattacgcctctgcttattgt gaggaacaagacaccactgactcaacagctcatgaagcagaacctaaaagcttttccacc gttcaatctgattgttgcaatgtggaagctgatgcagcgatgttaaaaatggaaaaacta tctctggcgccatctatgcccacaaagttagactcgcttaagcctgaaaagaaatttgat tctaaacaagtggaaaccaaaacaaagggtcctttgaaacgatccgtcacatcaacaact gcctcagtgactcaagccttggaaaaatacgctgtaaaaacaatgaacagaaattcatct gcgttgcacgatttctcggtgacaggtgatatcagaatgctccttgttctgcagcgccac ctaacggatgttcgtgactgcaacggcgactctgtcctccacgtagcagttatccatgat cagatgcaggtcctctcttcgctcctggatgtgatcgttacactgaataacaagcagaac atcattgatgcggtcaacccacagaagcaaacagctctacagatggcggtgcttagtgat aatgtggatgctgttattgatcttctaaaagttggcgcggatccacttgtacttgacagt tacggcaaccactccattcatgtcgcttgtcgtcatggaaacgccgacattctaaatcga ctactaaactgtaaacaagtttatgacatggaaatggatacgaagaatttcgacggtctt gggtgtttccaccttgcaggaaaggcgagttcaggaactcgtcaatgcctcggtttgctc cgagaattcgcatttgacgtcaacatgccggacatgaagagccgacgtactgctttgcac atggctgttgaagccgacaacatcgtggtggctggctgtcttatctcagagtgtgatgcg gacttggaagcttcaacgtatgaaggttacactcctcttcatgttgctgcatccctggat cactgtgagatcgctactctgctcctcgcatgcggagctgatccggaggcgagctctgct cctccgggaagggaagatggaatgactcctcttgatcttgcaacttccgatcagatgaga gatcttctcaatggtgtgttcatgaaaaatataaaagaagaacttgacaactccaactac agtgatgaagaagaccttgctacacttgacccattgattagactgaagctgtgtaagctt ctcaatctggaaaaatccggttctgactggtatgctctagctagccggttgtctcttgac tacattgttccctttattgacacaacagaaaatcccactgacttgctgctagataactac atgtttaagcacggcacagtcgctggcttacgatcagcgcttatgaacattggaagacac gatgcagttcaacttctaaacagagcagcaacaacaacctgcgttgacaagttcgacagc aatgctacagaacaatgcgacagtgcattcggcagcttgcccaaccaaatcgacgttatt tga

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