Ciona intestinalis (yellow sea squirt): 778742
Help
Entry
778742 CDS
T01056
Symbol
rar
Name
(RefSeq) nuclear receptor
KO
K08529
retinoic acid receptor gamma
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778742 (rar)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cin03310
]
778742 (rar)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
778742 (rar)
Nuclear receptors [BR:
cin03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
778742 (rar)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Cloacin
Motif
Other DBs
NCBI-GeneID:
778742
NCBI-ProteinID:
NP_001071806
Ensembl:
ENSCING00000006945
UniProt:
F6VND6
Q4H2W2
LinkDB
All DBs
Position
9:complement(3680102..3701478)
Genome browser
AA seq
638 aa
AA seq
DB search
METVESVDSSVDSRSHMESSQTLQRKSSIDSQATTAESLGSPSPRILLSPSPQPLPFFPH
YTAQFYGLGTSESPKHFKSASSASNMSSHPSVSASQSDYHKQFMSQALSMAMMPPSFPPS
YGIGGYNSAVDIQGFLISAAAQAMSAALKPHALNSNSPPSAQSSWKLPPTSGTASPVGNY
LHKSHTSSGRGADRLNEVDCMPNPSHFNGTANHGQENAKRRKMSEMRDGGRERNPIESSV
SPTSVGLNNHTGEKCRASPDSVGLSSTGSSYSGSESDGLHPGQCPPSPPPPPRIYKPCFV
CGDKSSGYHYGVASCEGCKGFFRRSVQKNMQYTCHRNKQCLINKSTRSRCQYCRLQKCIQ
AGMLRESVRNDRNKKRGKEKEGKSDQNGVDEPSCSPEIEALVTSVHKFHVETFPLSSELK
KYQIPSPPIVKDTSAKTDSNLWEKFAELSTKCIVKIVEFAKGIPGFQDFTIADQITLLKC
ACLEVLFLRICSRFSPEHDTMTFSDGLTLTRKQMRVCGFGPITEQVFSFAQSLHPLNADA
TEIGLLSAICLVSADRVDLEEPDKVELLQESLVEGLKYYARKRRPHTPQVFPKLIIKISD
LRSISLKGADRVVTVKTEIPCGAMPPLMSEMLENDEVE
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggttgaaagtgttgattcatcagtagattcaagaagtcacatggaatcttcc
caaactttacaaaggaaatcttccattgacagccaagctacaacggctgaaagtcttggt
tctccttcaccgagaatattgttatccccttcaccccaacctttaccattctttccacat
tatacagcccagttttatggtcttggaacatcagaatctccaaaacatttcaaatcagct
tcatctgcttcaaacatgtcctctcatccctctgtttctgcctcgcaaagtgattaccat
aaacagtttatgtcccaggctttatccatggcaatgatgccgcccagcttcccaccaagt
tatggaattggtggctataattctgcagttgacattcaaggtttcttaataagtgctgca
gcgcaagcaatgagtgctgcgttgaaacctcacgccctgaattccaacagccctccctct
gcccaatcctcatggaagttgccacctacatcgggcactgcatcccctgttggcaattat
cttcacaaatcccatacaagttcaggtcgaggcgctgatcggctaaatgaagtggattgc
atgccaaacccatctcattttaatggcacagcaaaccatggacaagagaatgcgaaacgg
aggaaaatgtcagaaatgcgagatggaggacgtgagagaaatcccattgagagctcggtg
tcgcctactagtgttggtctcaacaaccacacaggggaaaaatgtagggcttctcccgac
agcgttggcctctcatccactggcagtagttactctggttcggaatccgatggtcttcac
cccggccaatgtcccccctccccaccaccaccccctcgtatatacaaaccctgttttgta
tgtggagacaaatcatctgggtatcattacggagtggcatcttgcgagggttgcaagggc
ttcttccgacgtagtgtgcagaagaacatgcagtatacttgtcatcgtaacaaacaatgt
ctcatcaacaagtctacaaggagccgatgtcagtattgccgcttgcagaaatgcatccaa
gctggtatgcttcgtgaatcggtcagaaacgatcgtaacaagaagcgtggaaaggaaaag
gaaggaaagtcggatcagaatggagttgacgagccttcgtgttcacctgaaatcgaagcg
ttagttacatctgttcataaatttcatgttgaaacttttccactcagctcagaattaaag
aaatatcaaattccttccccgccgattgtgaaagacactagtgcgaagacggacagcaac
ttatgggagaaattcgctgaactatccaccaaatgtattgtgaagatagtagagttcgct
aaggggatcccagggttccaggacttcacaatagctgaccaaattacgctgttgaaatgc
gcttgcctagaagtgctgtttcttcgaatttgctcacggttttcaccagagcacgacacg
atgactttctcggatggcctcacacttacacgcaaacaaatgagggtgtgcgggttcgga
ccaattacggaacaggttttctcgttcgcacaatctttgcatccgttaaacgctgacgcc
acagaaatcggcttgctcagtgctatttgtctcgtatccgcagatcgagttgacctcgag
gagcccgacaaagttgagttgctgcaagagtctttggtcgaaggtttgaaatattatgct
cggaaaagaaggccgcacacgccacaagtttttccaaaacttataattaaaatctcagac
cttcgaagcatcagcttgaaaggcgctgacagagtagtaactgtaaaaaccgagattccg
tgcggagccatgccaccccttatgtccgagatgctggaaaacgacgaggtcgaataa
DBGET
integrated database retrieval system
