Ciona intestinalis (yellow sea squirt): 778752
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Entry
778752 CDS
T01056
Symbol
six12
Name
(RefSeq) transcription factor protein
KO
K19472
homeobox protein SIX2
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778752 (six12)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
778752 (six12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_3
Phage_mat-A
HTH_NDX
Motif
Other DBs
NCBI-GeneID:
778752
NCBI-ProteinID:
NP_001071814
Ensembl:
ENSCING00000022188
UniProt:
A0A1W2VNV2
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Position
3:complement(1271770..1289129)
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AA seq
436 aa
AA seq
DB search
MMAATLALNPYPAMLPQVVQHPSAVAAAAAAHFSAVSAGPSTQMNPGMMSGYGGMTGPTQ
PPTTQNGPGLSFGFTQEQVACVCEVLQQGGNIERLARFLWSLPGCEHLHKNESVLKAKAV
VAFHRGNFRELYKIIENNNFSEHNHAKLQQLWLKSHYIEAEKLRGRPLGAVGKYRVRRKF
PLPRSIWDGEETSYCFKEKSRAVLRDWYTHNPYPSPREKRELAEGTGLTVTQVSNWFKNR
RQRDRAAEAKERDGSDMSQGGMSIPPSGMGTPPHQQTGIDNINTPAHGSQIGADMMEQKS
SIDVMSQQHVHQQQLHQHHQDQMIHHHSHTPPHPSHHPMNPHHPQNNRLPPQSMIMSSLN
DTHLQHHGVLPSQYTLPGTPHSGQMTPLQHPEMHYPTHPQQLSHHMSSSASSHAAVSMHE
TMLQHGLANNPVEMGS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagccaccctggcgcttaatccttacccagcaatgcttccccaggtcgttcaa
catccatctgctgttgccgctgcagcagctgcgcatttttccgctgtttcggccggacca
agcacacaaatgaaccccggcatgatgagcggatacggcgggatgacagggcccacacaa
ccgccgacgacacaaaatggacccggcctttcgtttggtttcacacaagaacaagtggct
tgtgtttgcgaagtacttcaacaaggtggaaacatagaacgtcttgcaaggttcctttgg
tcgcttcctggatgtgaacatcttcacaagaacgaaagtgtcctgaaagcaaaagcagtc
gtcgcatttcaccgaggaaactttcgagagttatacaaaatcatcgaaaacaataatttt
tcggaacacaatcacgctaaacttcaacagctttggttgaaatctcattacatcgaagct
gagaaactgaggggtcgtccattgggagccgtaggaaaatatcgggttcgacgaaaattt
ccactgccgaggtctatttgggatggtgaagaaaccagctactgctttaaggaaaaatct
agagccgttctgcgggattggtatacacacaacccatatccttccccgagagaaaagcgt
gaattggctgaaggtacgggacttactgtgactcaagttagcaattggttcaaaaatcgg
cgacaacgcgatcgagcagcagaagctaaagaaagagatggaagcgacatgtcccagggc
gggatgtccatcccaccatcgggtatggggacaccaccgcatcaacaaacgggaatcgac
aatatcaacacaccggcacatggaagtcagattggagcagacatgatggaacaaaaatcc
agcattgatgtgatgtcacaacaacatgttcatcaacaacagctccatcaacatcatcaa
gatcaaatgatccaccatcactcacacactcctccgcatccatcacatcatcccatgaat
ccgcatcatccgcagaacaatcgcctcccaccccaaagtatgattatgagttcattaaac
gacacacatctccagcatcatggtgtgcttccgtcacaatacacattacccggcacacca
catagcggacaaatgactccgctccaacacccagagatgcattacccaactcatccgcag
cagttatctcatcacatgtcatcatccgcaagcagccacgcagcagtgtcaatgcacgaa
acaatgttgcagcatggattagcgaacaacccagtcgaaatgggatcgtaa
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