Ciona intestinalis (yellow sea squirt): 778784
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Entry
778784 CDS
T01056
Symbol
trh
Name
(RefSeq) transcription factor protein
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778784 (trh)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
778784 (trh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
778784
NCBI-ProteinID:
NP_001071842
Ensembl:
ENSCING00000001010
UniProt:
Q4H2N9
LinkDB
All DBs
AA seq
753 aa
AA seq
DB search
MQCHNAGPTVLSLNASVLKYLSSKQKFFEQLEMLKNQQIRNDAAESKAGEELYQTQEKSN
VRLTCVKKEKSRDAARSRRGKENFEFYELAKLLPVPSETSSQLDKASIVRLTMSYLQLQK
FMLARKSTEPASKPDYFCRAAQQSSFMENCMGSFILQSLDGFIFVLNKDGRFLFVSDTVS
IYLGLAQVDLIGTSIFNYTHPADHPELVDHLKNRSNSHHNITRNFHSSDKNEELEADTSS
CSFFIRMKSTLTRRGSNVKSIGYKVVHMTGCLSSKIHRRLKVEDASSDDETPTNLDAMLG
LTGIAQVLPPPTLIDIKLDQPMFVVRIDASLRVNYCEDRIEQLTDYTMDQVKGRTLYHFI
HSSDLTKIRRCHAAILSKGQVVTPYYRWLLKSGKHLWLQSCVTIVVDKHLSSDDDMFIWI
SYVLGEDISCATSNSTTTKNLCKTKLVNGILEKLEDTSMIDRKLKKVHSLPTRMYSSESS
EKLNNEPTNLCINRANSTKRSSSVSDDLECKKQKPSLKSMIPEPTEAKPLKLTKHDDSLD
SSSKLWYNPPNREITDHSDLPPGVKVGHPGGTLMTVQPSPTVVRHHYPFGIDPNLLNSNP
LLAKMLTAGCAGYDSLFSQSDALIFAAPSMSFLTPVLAPVPHLVPTTNICPSSVATIIEE
LRKDPLRKKSPPNKVVLPNNTQVKNSPKENESIASSAGCSQTSRTSSLQNTVLSLPNNTV
FLSPIPGYQHHTTNPLLLGSIKFPQQINALNSL
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgccacaacgctggccctacggtgctaagcttaaatgcaagcgtgctaaaatat
ctgagttcaaagcaaaagtttttcgaacaactggaaatgcttaaaaatcagcagattaga
aatgatgcagctgagtcaaaggctggggaagaactgtatcaaacacaggagaaatctaat
gttcgactcacatgcgtgaagaaggagaagtcccgtgatgctgcacgctctcgaagagga
aaagaaaattttgagttttatgagcttgccaaactacttccagtaccttctgaaacctca
agtcagctcgacaaagcatctattgttcgtctcacaatgagttatcttcaactgcagaag
ttcatgttggctcggaagtccactgagcctgctagcaaacctgattacttttgtcgtgcc
gctcaacaatcttcattcatggaaaactgcatgggaagcttcatactgcaaagccttgat
ggtttcatattcgtgctgaacaaagacggaaggtttttattcgtgtctgacactgtatct
atatacttaggccttgcacaggttgacttgataggaacaagcatattcaactatacccac
cctgcagatcatcctgaacttgtagaccacctaaagaacagatcaaacagccaccataac
ataacacgcaatttccactcttctgataaaaatgaagagttggaagcggatacatcatct
tgttcatttttcattcgaatgaaatccacgcttacaagaagaggaagtaatgtgaaatca
atcggatacaaggttgttcatatgactggttgtctcagcagcaaaatacatcggcgacta
aaagtcgaagacgcttcaagcgatgacgagaccccaaccaatcttgatgcaatgctgggg
ctaacggggatcgcccaggtgcttcctcctcccacgcttattgatataaaattagaccaa
ccgatgttcgtcgtaagaatcgacgcttcactgcgtgtcaactactgcgaagacagaatt
gagcaactgacagattacacaatggaccaagtaaaaggacgaacattatatcacttcatt
cattcaagtgatcttacaaagataagaagatgtcatgctgcaattctttcaaaaggccaa
gtagtgacaccgtattatcggtggctgcttaaatctggtaaacatctctggttgcagtca
tgcgttacgatagtggtcgacaaacatctttcttcagatgatgatatgtttatttggata
agctatgttcttggtgaagatatatcgtgtgcaacctctaactcaacaacaacaaaaaat
ctttgtaaaacgaagcttgtaaatgggattttggaaaagctggaagatacttctatgatt
gacaggaagctaaaaaaggtccattcacttccaaccagaatgtacagtagtgaatctagt
gagaaattaaataacgaaccaaccaatctgtgcattaacagagcaaattctacaaagaga
agttccagtgtctcagatgatttggaatgcaagaaacaaaaaccttcactcaaatccatg
atccctgaacccactgaagcgaaaccattaaaattaacgaagcatgacgactcccttgac
tcaagctcgaagctctggtacaacccacccaaccgtgaaataactgaccacagcgattta
ccccctggggtaaaagtgggtcacccgggaggtaccttaatgacagtacagcccagcccc
acagtagtccgacaccattacccatttggaattgacccaaacttgctcaactctaacccg
ctgctcgcgaaaatgctcacagcaggttgtgctggttacgactcattattctcgcaaagc
gacgctctaatcttcgcagctccgtcaatgagtttccttactcctgtcctagctccagtt
ccgcatctggtcccaacgacaaacatatgcccttcatctgtagctactataattgaagag
ctccgaaaagaccctctacgtaaaaaaagcccgccaaacaaagtcgtcctaccaaacaat
acccaagtcaaaaactctccaaaagaaaacgaatcaatcgcatcatcagctggttgctcg
caaacctctcgaactagctcgttacaaaacactgtcctatccctaccaaacaacacggtt
tttttaagtcctatccctggctaccaacaccacaccactaacccattattacttggttca
ataaaattccctcaacaaataaacgcgctaaactcgctctaa
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