KEGG   Ciona intestinalis (yellow sea squirt): 778816
Entry
778816            CDS       T01056                                 
Symbol
zf(c2h2)-30
Name
(RefSeq) zinc finger protein isoform 1
  KO
K23195  transcriptional repressor CTCF
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cin03000]
    778816 (zf(c2h2)-30)
   03036 Chromosome and associated proteins [BR:cin03036]
    778816 (zf(c2h2)-30)
Transcription factors [BR:cin03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    778816 (zf(c2h2)-30)
Chromosome and associated proteins [BR:cin03036]
 Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    778816 (zf(c2h2)-30)
SSDB
Motif
Pfam: zf-H2C2_2 zf-C2H2 zf-C2H2_4 zf-H2C2_5 zf-Di19 zf-C2H2_16 Actin_micro DUF629 zf-C2H2_jaz XPA_N Zf-C2H2_ZNF451_C zf-C2H2_7th_ZNF462 TFIIIA_zf-C2H2 zf-C2H2_REST C1_1
Other DBs
NCBI-GeneID: 778816
NCBI-ProteinID: NP_001071870
Ensembl: ENSCING00000006765
UniProt: Q4H2I0
LinkDB
AA seq 634 aa
MADDGKDSVEVTSQIESVNGTVAPPNDSIEPEENEVSEKNEEKIIEEVSNEAPAEAPVED
GTTTTVQFIAVSADEHARMVTAGELPESVHGADVHMQIPGAEAQQVRLIAVDSNGVPVTE
SAILQAAAEQAGIVFITKDDNGHDSQITIDQAMQLSMRENPPMITATTAAVVLEQKEKEV
HQDTDGNDTEDESETKKPSVRKPRLKLRVYSQKDGGVDEVATSFLDDGSLALTDEVETLE
EKPNDESVYEFQQRQRGTMEEWRDRECEIILKDILQTLKDEDPPTGGDTEQPSDVTMLDP
TMFKKNSKRATDKSRDRRKIYQCRECSFYSHRHSNLVRHMKIHTDERPYKCHLCERSFRT
NTLLRNHINTHTGVKPYKCTVDGCVMAFVTSGELTRHTRYIHTHEKPFRCTLCDYASVEI
SKLRRHFRSHTGERPYSCEECGKAFADSFHLKRHRMSHTGEKPYECPECNQRFTQRGSVK
MHIMQQHTKTAPKFKCEICRTLLGRKSDLNVHMRKQHAFQEAPTQCRYCDELFHDRWSLM
QHQRTHRSCGQRFRSDDGVSSKRRRLGEDEDSDWKEEEEFQNMILEAEEGDVRRVTVYVE
EEPLVGTQDKEEEGDGGSFVELENATKETIIADA
NT seq 1905 nt   +upstreamnt  +downstreamnt
atggcagatgatggaaaagatagcgttgaagtaacttcacaaattgagtcggttaacggc
actgtagcgccacccaatgactcgattgagcccgaggaaaatgaagtgtcggaaaaaaat
gaagaaaaaattattgaagaagtttcgaatgaggctcctgccgaggcccctgtggaagac
gggacaacgacaaccgttcaattcatcgctgtatcagctgatgaacatgctcgtatggtc
accgctggcgagttaccggagagcgtgcatggggccgacgtacatatgcagataccaggc
gctgaagcacaacaagttcgattaatcgcagtagacagcaacggtgttcccgtcaccgag
tcagcgattctgcaagcagctgcggaacaagcgggcattgttttcataacaaaggacgac
aatggacatgattcgcagataactattgaccaagccatgcagttgtccatgagggagaac
ccccccatgataacggcgaccactgcagctgttgtgctcgaacaaaaagagaaagaagtt
caccaggataccgatggcaacgatacagaagacgaaagcgagacaaagaaaccatcggta
cggaaaccacgattgaaacttcgcgtgtacagtcagaaggacggtggagttgacgaggtg
gcaacgtcgttcctcgatgatgggagcctcgctctcactgatgaagttgaaactttggaa
gaaaaaccaaacgatgaatcagtttacgagttccagcagcgtcagcgaggaacaatggaa
gaatggagagacagggaatgtgaaattatcttgaaggatattttacaaacattgaaggac
gaggatccaccaacgggtggcgacacagagcaacccagtgatgtcacaatgcttgaccca
accatgtttaaaaagaattcgaagcgagctacggataaaagtcgcgaccgtcgtaagatt
tatcagtgccgggaatgttcgttctacagccatcgtcatagtaacttggttcggcacatg
aagatccacaccgatgagcgaccttataaatgccatctttgcgaacgatcgtttcgtacg
aacacattacttcgtaaccacatcaacacacatacaggagtgaagccgtacaaatgtaca
gttgatggttgcgttatggcattcgtaaccagtggcgagctaacccgacacacaaggtac
attcacacccacgagaaacctttccgatgtacgttgtgcgattatgcgagcgttgaaatc
agcaaactacgccgacatttccgttcccacactggggagcgaccttattcttgcgaggag
tgtggcaaagcgtttgctgatagttttcatttgaaacgacatcgaatgtcgcacaccggt
gagaaaccttacgagtgtccggaatgtaaccagcgttttacccagcgtggtagtgtgaag
atgcatatcatgcagcaacacacgaagacggctccgaagtttaaatgcgagatttgtcga
actttgttgggaaggaaaagtgatttaaatgttcatatgcggaagcaacacgctttccag
gaggcgcccacccaatgtagatattgcgatgaattattccacgatcgatggagtttgatg
caacatcaacgaacgcatagaagttgcggccaacgattcaggtccgatgatggagtgtca
tcaaaacgacggcgactcggcgaagatgaggattctgattggaaggaagaagaagaattc
cagaacatgatacttgaggcggaggagggcgacgtgcggagggtgacggtttatgtggaa
gaggaaccgttggtaggaacgcaagataaagaggaagaaggagacggcgggtcgttcgtt
gaacttgaaaacgcaaccaaggaaacgataattgctgatgcgtga

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