Ciona intestinalis (yellow sea squirt): 778840
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Entry
778840 CDS
T01056
Name
(RefSeq) dynein intermediate chain 2, ciliary
KO
K10409
dynein axonemal intermediate chain 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
778840
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cin03037
]
778840
04812 Cytoskeleton proteins [BR:
cin04812
]
778840
Cilium and associated proteins [BR:
cin03037
]
Motile cilia and associated proteins
Dynein arm
778840
Cytoskeleton proteins [BR:
cin04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
778840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
Beta-prop_EIPR1
WD40_WDHD1_1st
Beta-prop_HPS5
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
WDR90_beta-prop_4th
Beta-prop_ELP1_2nd
Motif
Other DBs
NCBI-GeneID:
778840
NCBI-ProteinID:
XP_002129294
Ensembl:
ENSCING00000008832
LinkDB
All DBs
Position
4:complement(4670471..4676363)
Genome browser
AA seq
684 aa
AA seq
DB search
MAPKAKSVKPPGSTIGAKPSKMKGRPKIRDDDDMTEIGDLGDDSYVHGKTLVKPDDQLDL
TEVELKEEFTRILTANNPHAPQNIVRFNFKERTYKQTSSVEQIAIHFALDGNMLHKDSDE
ARRQRAKAGMGESKSEAALSEAGEEEGGEGEDGEKEEVVEAPPPKKESLRNQFNFSERAS
QTFNNPYRERGTATEPPPRANFSSTANQWEIYDAYYEDLQKQEKAKDKTKQIPTYRKEDD
KTKKKLVAMETASDDISRVTRAAKIVERMVNQNTFDDIAQDFSYFEDASDEFRDQEGTLL
PLWKFSFDKAKRLAVTSICWNPKYVDMFVVGHGSYDFTKQGRGMLLFYTLKNPSHPEYIY
STESGVMCLDIHPIYQYLVCVGFYDGSVGVFNTQEKRPGPVYKSTAKSGKHTDPVWQVKW
QKDDLDNNLNLYSVSSDGRVVSWTLVKDELIYADVIKLTVDDLPTEGPDGTQLQLLGCGT
SFDFHKKIDYLFLVGTEEGKIHKCSKAYSSQFLDTIDAHHMAVDAVRWNPFHPDIFISCS
ADWTVKIWDHNYGNQAMFTFDLNSAVGDVAWAPFSSTVFAAVTADGKVHVFDLNINKYEA
LCEQSVVQKKKTKLTHIEFNPRHMIICVGDERGYVTSLKLSPNLRKVPKKKKGEENVGID
HEIEIAKLDKILSLVREPDNKEKK
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcacccaaagcaaaatctgtgaagccaccaggctccacgattggagcaaaaccaagc
aaaatgaaagggagaccaaagatcagagatgatgatgacatgacagaaattggtgacctc
ggtgatgactcgtatgttcacggaaaaactcttgtgaaaccagatgatcaacttgaccta
acagaagttgaattgaaagaggaattcacaagaatattaacagcaaataatccccacgca
cctcagaatattgttcgatttaacttcaaggaacgaacatacaaacaaacttccagtgtt
gaacaaatagcaattcactttgcgttggacggtaacatgttgcataaagatagtgatgaa
gcaagaaggcaaagagcaaaagctgggatgggagagagtaaaagtgaagctgctctaagt
gaggcaggagaggaggaaggaggagaaggggaagatggagagaaagaagaagtagtagaa
gctcctcctccaaagaaggagtctttaaggaatcaattcaactttagtgaacgtgcatct
caaacattcaacaatccatacagggaacgaggtacagctactgaaccaccaccaagagcc
aacttttcatcaactgcaaatcaatgggagatatacgatgcatattatgaagacttacaa
aaacaagaaaaagcaaaagacaaaacaaagcagataccaacgtacaggaaagaggatgac
aagacgaagaagaagttagttgctatggaaactgcatcagatgatatttctagagtgaca
agagcagcaaagattgttgagagaatggtaaatcaaaacacattcgatgacattgcgcaa
gacttcagttattttgaggatgcatcggatgagtttcgagatcaggaaggaactttactt
ccactgtggaagtttagttttgacaaagcaaagagattggctgttacttctatatgctgg
aatccgaaatatgttgacatgtttgttgtcgggcatgggtcctatgatttcacaaagcaa
ggacgtggaatgctgcttttctacactttgaaaaacccctcacacccagagtatatttat
tcaactgaaagtggggtcatgtgtcttgacattcatccaatttatcagtatcttgtgtgt
gttggtttctatgatggcagtgtgggtgtgttcaacacacaagagaaacgaccaggacct
gtttataagagcacagccaaaagtggaaaacatacagatccagtgtggcaggtgaaatgg
caaaaagatgatctagataacaaccttaacctatattctgtgtcttctgatggaagagtt
gtatcatggactcttgtgaaggatgagctgatctatgctgatgtcattaaactaacagtg
gatgatttaccaacagaaggaccagatggtacacaacttcaactcctaggttgtggaact
tcatttgatttccacaaaaaaattgattatctattcctggtcgggacggaagaaggaaaa
attcacaaatgttcgaaagcatattcaagtcaattccttgacacaatagatgctcaccat
atggctgtggatgctgtgaggtggaatccattccatcctgatatctttatatcatgctca
gcagattggacagtcaagatatgggaccacaactatggcaaccaagcaatgtttacattc
gatttgaacagcgcagttggggatgtagcatgggcacctttctcatcaactgtgtttgct
gcagtaactgctgatggcaaggttcatgtttttgacttaaacatcaacaaatatgaagct
ttatgtgagcaatcagttgtacagaagaagaaaaccaaacttactcacattgagttcaac
cctcgacacatgattatttgtgtgggtgatgaaaggggttacgtcacaagtcttaagctc
tctcccaacttaagaaaagttccaaagaaaaagaagggagaagaaaatgttggtattgac
catgagattgaaatcgcaaaacttgacaaaattttgagcttggtgcgagaaccagacaac
aaagaaaagaaataa
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