Ciona intestinalis (yellow sea squirt): 778862
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Entry
778862 CDS
T01056
Symbol
zf(c3h)-9
Name
(RefSeq) zinc finger protein
KO
K13192
RNA-binding protein 26
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cin01009
]
778862 (zf(c3h)-9)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
778862 (zf(c3h)-9)
03041 Spliceosome [BR:
cin03041
]
778862 (zf(c3h)-9)
Protein phosphatases and associated proteins [BR:
cin01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
778862 (zf(c3h)-9)
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
778862 (zf(c3h)-9)
Spliceosome [BR:
cin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
778862 (zf(c3h)-9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup35_RRM_2
PWI
RRM_1
RRM_Nup35
RRM_3
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
778862
NCBI-ProteinID:
NP_001071908
Ensembl:
ENSCING00000003516
UniProt:
Q1RPZ0
LinkDB
All DBs
Position
14:complement(2883933..2898037)
Genome browser
AA seq
880 aa
AA seq
DB search
MVAIDNVDALQTWLTKKLSPVCDADPKALAKYVVALVKKEKSQDDLKTLCKEQLDVFLQK
ETDAFVSALFEALTSKSYIKEESITNVQTEVHRKSSSNDKQKENSRSHRTKSRSRSPHRV
RSQDGRRYNDDRRNRRRSPMASHRHQSNRRQRSRSSSPIARSSRSSVSPVHKRRSHRSSP
RQSRSPIRRKRIRKSSSPAQASENSQSKDGNQKSYSSETKEKKERCWDYDQKGFCMKGDS
CPYDHGTDAVVVDDISITSPTRKNANEATNIDTRLPPPIAHTNIEPLQHLIPRLPISMPM
PIPPVMPPMSLPPPHILHQFPPPPLNLRPSNPNIMPPQPQPYNPEAPALHGIQNQQNPAI
NISNTFQKKPDQDNDSMKRPFHRTAGNRTIIVKKIPPSLNNITKLNEHFTKFGSINNIQV
KFNMQPNQALIEFAHPNSARAAMRDTDAILNNRFIRAFWFNQNEIQTANNEASATSTIKD
RVGSLPNPNQLKYTAPSIERKKANADVNVTRTITNPLAPPAAEKTDKPNTDAATVEAKKA
VIAARNSMRQKSQQRQRLVLQKKMELQKKKRGLLQKQVEQQKLLLAKLDSNKNMSPKERL
ELIKTLKALTSSTDIIRHEKPSKVEVAIKQSQKQKDLLDAELDLYNASTNGENTVSLKQK
LNQLKVEAKTMGIVTGYRGGWSRGRGGSRMSSRGNHHRFIRSGANLDRRPCEIRVSGFQD
TEKDEMIAHFSEFGEIDTLTYDEEGITCAIKYKARQDAEHAASNGASFKGRNLIIVWTSQ
SKPNQRDFTASSDNGGSVEKVEATIKSEVGVAAGNDEDDNDDDDEDNISVVVDRVEPFTP
PQDDYGYPILEEELDEEALLTGGDIDDDDDVVSEERSWRH
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggttgcaatagataacgttgacgctttgcaaacctggctgacaaagaagttatcccct
gtttgtgatgcggatcctaaggcccttgccaagtatgttgtagctttggttaagaaagaa
aaaagtcaagatgatttaaaaactttatgcaaagagcagttggatgtatttcttcaaaag
gagacggatgcttttgtttctgcattatttgaagctttgacttccaaatcttacattaaa
gaagaatcaatcacgaatgttcaaactgaggttcatcgcaaatcaagttcaaatgacaag
cagaaggaaaattctcgttcccatcgaacaaaatcacgttccaggtccccacatagagtt
cgcagccaagatggtcgaaggtacaacgatgatagaagaaataggagaaggtcacccatg
gccagtcacagacatcaaagtaacaggcgacaacgtagtcgttcatcttcaccaatagct
cgatcatcaagaagttctgtttcgccagttcataaacgaaggtctcatcgttcttcacca
agacagtcaagatcccccattcgtagaaaaaggatccgaaaatcctcttctcctgctcaa
gcaagtgagaactcccaatcaaaagatggaaaccaaaagtcttattcaagtgaaactaaa
gagaagaaagaaagatgttgggattatgatcagaaaggattctgtatgaaaggagactcc
tgtccatacgatcatggcacagatgctgttgtagttgatgacatctcaataacctctcct
actcgtaaaaacgcgaacgaagctacgaacatagacactcgtttgccaccccctatagct
cataccaacattgaaccattgcaacacctcataccaagactgccaatatccatgcctatg
cctataccacctgtgatgccccccatgtcattacccccaccccatattctacaccagttc
ccacccccacctcttaaccttagaccaagcaaccctaacattatgcctccacaaccccag
ccttataacccagaagcccctgcattacacgggatacaaaaccaacaaaatcccgcaatc
aacatctccaatactttccagaagaagcctgatcaagataatgattcaatgaaacgacct
ttccatagaactgcaggcaatcgaaccatcattgtaaagaagattccaccttcattaaac
aacatcactaaacttaatgaacatttcactaagtttggctcaatcaataatatacaggta
aagttcaacatgcagcccaaccaagcgttaattgagttcgctcaccctaacagtgcccgt
gcagccatgcgcgataccgatgcgattctcaacaatcgttttattcgagctttctggttc
aaccagaatgaaatacaaactgccaacaatgaagctagtgcaacatctacaataaaagat
cgcgttggttcgcttccaaaccctaaccaactcaaatatacagctccttctattgagaga
aagaaggcaaacgcagacgtcaatgttacacgtacaatcactaaccctctagctccacct
gctgctgaaaaaacagacaaaccaaacactgatgctgccactgtcgaagctaagaaagcg
gtgattgctgctcgcaactcgatgaggcagaagagccaacagcgtcaacgacttgttttg
cagaagaagatggaattacagaagaaaaagagaggactcttgcagaaacaagtggagcaa
cagaaattactgcttgcaaagttggattcaaacaagaatatgtctcccaaagaaaggctt
gaacttatcaagaccctgaaagctttaacaagttcaactgatattatacgccacgagaaa
ccatcaaaagttgaagttgctataaaacaaagccagaaacagaaggacttacttgacgcc
gagttagatctttacaatgcttcaacaaacggagaaaacacggtttcattgaaacaaaag
ttaaaccagttgaaagttgaggctaagacaatgggtattgtgacgggatacagaggaggg
tggagtcgtggaagaggaggatcccggatgtcatcccgaggaaaccatcatcgttttatc
cgatccggagcaaatcttgatcgacgcccgtgcgagatacgcgtgtccgggtttcaggac
acggaaaaagatgaaatgattgctcatttttctgagtttggtgaaatagacaccttaaca
tatgatgaagaaggaataacatgcgctattaaatataaagcaagacaagatgctgagcat
gctgcatcaaacggagcttcatttaaaggaaggaatttaatcatagtgtggacttcacaa
tctaaaccaaaccagagggattttacagcttcctctgacaatggtggttctgttgaaaaa
gttgaagctacgataaaaagtgaggttggtgttgctgctggaaatgatgaggatgacaac
gatgatgacgacgaagacaatatctccgttgttgtggaccgtgtcgagccgtttactcct
ccccaggatgattacggatacccgatccttgaagaggagctagatgaggaggctttgttg
actggaggagacatagatgatgatgatgatgttgtttcagaagaaagatcgtggaggcat
tga
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