Ciona intestinalis (yellow sea squirt): 778908 Help Entry 778908            CDS       T01056                                  Symbol zf(ring)-20 Name (RefSeq) zinc finger protein   KO K20184   vacuolar protein sorting-associated protein 41 Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin04140   Autophagy - animal cin04148   Efferocytosis Brite KEGG Orthology (KO) [BR:cin00001]  09140 Cellular Processes   09141 Transport and catabolism    04140 Autophagy - animal     778908 (zf(ring)-20)    04148 Efferocytosis     778908 (zf(ring)-20)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cin04131]     778908 (zf(ring)-20) Membrane trafficking [BR:cin04131]  Endosome - Lysosome transport   Tethering complex    Hops complex     778908 (zf(ring)-20) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TPR_Vps41 Beta-prop_Vps41 WD40_WDHD1_1st Clathrin WD40_Prp19 WD40_CDC20-Fz WD40 zf-RING_Vps41 TPR_7 TPR_19 Beta-prop_HPS5 WDR55 TPR_PEP5_VPS11 TPR_14 Beta-prop_EML_2 Vps39_1 zf_RING_Vps8_fungal Motif Other DBs NCBI-GeneID:  778908 NCBI-ProteinID:  NP_001071945 UniProt:  Q1RPV5 LinkDB All DBs Position 7:5981456..5994436 Genome browser AA seq 841 aa AA seqDB search MASDSESSEEEWEEPKLKYDRMGNDLLEILRTDAASCIALHSKFVALGTHWGIVYILDHS GNNNTSKHCKPHATSVTGISLDGSGEHVASCSDDGTVKITGLYLDENNQVITEDQPVKSV ALDPNYSHSSSKQIVYGTNELVLLEKTWLGRNKRTVLHGGEGLVRCVKWRGSYIAWANDL GVKIYDMKQRRRITYIPRVGAGGTNRVLPKLGGTRVELYPAHIAWKDDTTLLIGWDKDIK VCAIRDKPSRDSRAPTKYCVVVHLFKTDFSCCGIAPLGDQIAALAYMEEDNEAGSTRPQL RILEPNAADKESFTELSRDALSIRGYQTYRCKDYSLQHDSTEIYFVSPKDIVVAQPRDED DRVDWLLHINHHREALEAVKEFGKRLKKHTYMEVGLLYLDHLIDSHDFTEAASVAPQILG NNMNHWEGLVHRCIKAHQVSVITAVLPRGDFRLPQACYELVLEELLKTNHKEFEKLLNDW PNDLYNIVTITNKVLTYLDRDSHNPVLLAALAKLYAADQRFDRALSIYLRIQHPDTFKLI RKHNLYAALQDNVVALMRFGEGEAVVLLLDHMEHVPIDKVVADLKRKPDYLHKYLHALYQ RDSHLGSEYHDLQLQLYAQFDRPKLLPFLKSSNYYKLETSLEICKERGYVDEQVFLLSRM GNASGALALITQNEENVGRAVEFCKEQNDSELWLELINRSIHKPEYIRGLLENIGTHVDP IILIRRIPSSMEIPGLRDAIVKILQDYSMQTALWFECRKVLSSDVISLLRKQLRVNSRPI SIDEERSCDACGRPLLCQNNGSVADMPVIVTFLCHHCFHDDCLPSQNRSSCNVCRGNIRH S NT seq 2526 nt NT seq  +upstreamnt  +downstreamnt atggcatcagactctgaaagctcagaggaagaatgggaggaaccgaaattaaaatacgat cggatgggaaatgatttgcttgaaatattaagaaccgacgctgcttcttgtattgcccta catagcaagtttgttgcccttggaacgcactggggaatcgtttacattttggaccacagt ggcaacaacaacacaagcaaacattgtaaaccgcacgctacttctgtcaccggcatatcg ctcgacggttcgggcgagcacgtagcgagttgttcagatgacggaacggtgaagattact gggttgtacctggatgaaaataaccaagttataacggaggaccaaccggttaagtcagta gccctcgaccccaactacagccacagttcttcgaaacaaatcgtttacggcacgaacgag ttggtattattggagaaaacctggttggggaggaataaacgcacggtgttgcatggtggg gaggggttggtgcgatgcgtcaagtggagagggtcatatattgcgtgggctaatgatctg ggagtaaagatatacgacatgaaacagcgacgtcgtatcacttacataccacgcgtgggg gcaggtgggacgaaccgggtgttacccaagttagggggtacgagggtggagttgtacccc gcacatatcgcatggaaagatgatacaacattgcttatagggtgggataaagacattaag gtttgtgcaatcagagataaaccttctcgggattcgagggcacccacaaaatattgcgtc gtagtccacttgttcaagaccgatttctcctgctgtggtatagcacccctcggtgaccag attgctgcacttgcgtacatggaggaagacaatgaagcaggttccacacgaccccagctc cgtatattggaaccaaacgcagccgacaaggaatcgttcaccgaattatcccgagacgct ctttcaataaggggttaccaaacctacagatgtaaagattatagtttacagcatgactcg acggaaatctactttgtttccccgaaagacatcgtggtcgctcaaccacgagacgaagat gatcgcgtcgattggttgttgcatattaatcaccatcgggaggcgctagaggccgtgaaa gagttcggaaagcgactgaaaaaacatacgtatatggaggtggggttgttgtatctcgat catttgattgacagccacgatttcaccgaagctgcatccgtcgctccccaaatacttggg aataatatgaaccactgggaggggctggtccaccgctgtataaaggcgcaccaagtatcg gtcatcactgcagtgttgccacgaggagatttccgattaccacaagcttgctacgaactt gtgctcgaagaattgttaaaaaccaaccataaagaatttgagaagttgttgaatgattgg ccgaacgatctttataatattgttacgataacgaacaaagtgttgacgtatcttgaccgg gattctcacaacccagtgttgctggctgcacttgctaagttatacgcagcagaccagcgt tttgatcgagcgttatccatctatctccgtatacaacatcccgacacctttaaacttata aggaaacataatctatacgcggcactccaggataatgtggttgccctgatgaggtttggg gagggggaggctgtggttctgttgctggatcatatggagcatgtaccgattgataaagtt gttgcagatctcaaacgtaaacctgactatctacacaagtacctccacgcattataccaa cgtgattcacatcttgggtccgaataccacgatctacaacttcaactttacgcgcagttt gatcggcccaagttactaccgttccttaagtcaagcaattattacaaacttgaaacttcc ttggagatttgtaaagaacgaggttacgttgatgaacaagtctttctattgagtagaatg ggcaatgcttcgggtgccttagctttgatcacccagaacgaggagaatgttggtcgggct gtcgagttctgtaaggaacaaaatgattcagagttgtggctcgagttgattaaccgctcc attcataaaccagaatacatccggggtcttctagaaaacatcggcacccacgttgacccg ataatactaatccgccgaatcccgtcgtccatggagatacctgggttaagagacgccatc gtcaaaatattgcaagattattcaatgcagacagctctgtggttcgagtgtcgaaaagtt ttatcgtccgatgttatttcattgttacgtaaacaattgcgagttaactctcggccaatc agcattgacgaggaaagatcatgtgacgcgtgtggacgaccactgctgtgtcaaaataat ggttcagtagcggacatgccagtcatcgtaacatttttatgtcatcattgtttccatgac gattgccttccttctcaaaacaggagttcatgcaatgtttgcagaggaaatattcgacac tcctga

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