Ciona intestinalis (yellow sea squirt): 778936
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Entry
778936 CDS
T01056
Symbol
swi/snf
Name
(RefSeq) SWI/SNF protein
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
778936 (swi/snf)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
778936 (swi/snf)
03036 Chromosome and associated proteins [BR:
cin03036
]
778936 (swi/snf)
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
778936 (swi/snf)
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
778936 (swi/snf)
RSF complex
778936 (swi/snf)
WICH complex
778936 (swi/snf)
B-WICH complex
778936 (swi/snf)
NORC complex
778936 (swi/snf)
BRF complex
778936 (swi/snf)
NuRF complex (fruit fly)
778936 (swi/snf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
HAND
ResIII
HDA2-3
DEAD
DBINO
Myb_DNA-binding
ERCC3_RAD25_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
778936
NCBI-ProteinID:
NP_001071967
Ensembl:
ENSCING00000004110
UniProt:
Q4H2Q8
LinkDB
All DBs
AA seq
1003 aa
AA seq
DB search
MSGTASDTGALSNHSGSENEEEKTPPPKSGYAEKMQQDHGKRFEFLLKQTEIFAHFMNPT
VKTKSPTSPLKMRGRPRLCSKEEPSASTAAADHRHRRTEQDEDEELLSDARKSQGAITRF
EKSPHYVKNGEMRDYQIRGLNWMISLYENGISGILADEMGLGKTLQTISLLGYLKHYRSI
PGPHMVIVPKSTISNWVNEFERWCPSIRTVCLIGSKDQRATIIRDVMMPGEWDVCITSYE
VIIIEKACFKKFNWRYVVIDEAHRIKNEKSKLSTIVRQFRSTNRLLLTGTPLQNNLHELW
ALLNFLLPDVFNSSEDFDSWFNANNLEDDKGLVTRLHGVLRPFLLRRLKSDVEHSLLPKK
ETKIYTGLSKMQREWYTKILVKDIDIINAAGRTDRVRLLNILMQLRKCCNHPYLFDGAEP
GPPYTTSEHLVVNSGKLSVLDKLLPKFQEQGDRVLIFSQMTRILDILEDYCMWRGYNYCR
LDGQTPHEDRQRQINEFNRPGSEKFIFMLSTRAGGLGINLMTANIVILFDSDWNPQVDMQ
AMDRAHRIGQKKQVMVFRLITENTVEERIIERAEMKLHLDNIVIQQGRLVDQSQKLGKDE
MLNMIRHGANHVFASKESEITDEDINAIIAHGEARTNEMKQRLHKLGEGALRKFTLDEGE
SAYSVYKFEGQDWKGKQAEGGLLPWIEPPKRERKANYAVDQYFREALRVSEPKAPKAPRP
PKQPSVQDFQFFPPRLFELLEKEIFCFRKSIGYKVPSDAVEVQEQQRLVDEAEPLAEEEL
VEKEQLLTQGFTGWNKRDFNQFIKANEKFGRDDIESISKEVEGKTPAEVIEYSAVFWERC
NELQDIERIMAQIERGEARIQRKISIKKALDAKIARYRAPFHQLRIQYGTNKGKNYTEEE
DRFLICMLHKLGLERESAYDELRAGVRQAPQFRFDWFIKSRTSMELQRRCNTLITLIERE
NQELEERDKYNPLIKKKGRNDVTHHKRKAEENTDGKVKKKKDH
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcacggcttccgacactggagctctctccaatcactctggtagcgagaatgaa
gaagagaaaacacctcccccaaaatctggatatgctgaaaaaatgcaacaagaccatggc
aaaaggtttgagttcctgctgaaacagaccgagattttcgctcactttatgaaccccacc
gttaaaaccaaatcccccacaagcccccttaagatgagaggaagaccacgactttgctcc
aaggaggaaccttcggcaagcactgctgctgctgaccaccgacaccgtcgtaccgagcaa
gacgaagacgaggaattattatcggacgctcgaaagtcacaaggagccatcacgaggttc
gagaagtcaccgcattatgtcaagaatggggaaatgagagattatcagatccgtggtcta
aactggatgatatctttgtatgagaatggtattagtggaatacttgctgatgagatgggt
ttagggaagacgttacaaacaatatcattgcttggctacttgaaacattaccgtagcata
cctggcccccacatggttattgtaccaaagtccactatatcgaactgggtgaatgagttt
gaacgttggtgtccttcgataaggactgtgtgtcttattggatccaaggatcaaagggcg
accatcatacgcgacgtaatgatgccgggcgaatgggacgtatgcatcacctcatatgaa
gtgatcattatagagaaggcttgcttcaagaagtttaactggagatacgttgttattgat
gaagctcacaggatcaagaatgaaaagtcaaagttatccacgattgtccgacaattccgt
agcacaaaccgattgttgttaacgggaacccccctacaaaacaacctccatgaattgtgg
gcgttactaaacttcttgctgcctgatgtcttcaattcatctgaggattttgactcgtgg
ttcaacgcgaacaaccttgaagatgacaaaggacttgttacaagactgcatggggtactt
cgtccgttcttacttcgaagattgaagagcgatgtcgaacatagtttacttcccaagaaa
gaaaccaagatttacaccgggcttagtaagatgcaacgagaatggtacaccaagatcctg
gtaaaggacatcgacatcatcaacgcagctggtcgtaccgaccgtgttcgtctcctcaat
atattgatgcaacttcgcaaatgttgcaaccatccatatttgtttgatggagcggaacct
ggtccaccttacaccactagtgaacatctggtggtcaacagtggaaagctatcagtgttg
gataaactgctgcctaagttccaggaacaaggcgaccgggttcttatcttcagtcagatg
actcgtatattggatatactggaggattactgcatgtggaggggttataattattgcagg
ttggatgggcagacaccgcacgaggatagacaacgccagattaatgagttcaacagacca
gggagtgaaaagtttatcttcatgctttccacacgagctggtggtttaggaatcaatcta
atgacggcaaatattgtgattttgttcgatagtgattggaatccacaagttgatatgcaa
gcaatggaccgagcccatagaatcgggcagaagaaacaagttatggtgttccgacttatc
actgaaaatactgtggaggaaagaattattgaacgggctgaaatgaaacttcatcttgat
aacattgttatacaacaagggcgcttggttgatcagagtcagaaacttggcaaggatgaa
atgttaaacatgatacgacacggggcgaaccatgtatttgcttccaaggaaagtgagata
accgacgaggatattaatgctattattgcccatggggaagctaggacaaacgagatgaaa
cagcgactccataaacttggcgagggagcgctacgtaagttcacactagatgaaggggag
agtgcttactcagtgtataagtttgaggggcaagattggaaggggaagcaagctgagggt
gggttacttccatggatcgaaccccctaaacgtgaacgcaaagccaactacgccgtcgac
caatattttcgagaagctttgagggttagtgaacccaaggccccaaaggcaccccgccca
cccaagcaaccatccgtccaagactttcaattcttcccaccaagattgttcgaattatta
gaaaaagaaattttctgtttccggaaatccattggttacaaagtgcccagtgatgccgta
gaggtccaggagcaacagaggttggtcgacgaagctgaaccattggcggaagaggaattg
gttgagaaggaacaattattaacacagggcttcactgggtggaataaacgggatttcaat
caatttattaaagctaatgaaaagtttggaagggatgatattgagagtatttctaaagag
gttgaagggaaaacccccgcagaggtcattgaatattcagcagtgttctgggagcgatgt
aatgaactgcaagacatcgaacgtataatggcacaaatagaaagaggggaggcaagaata
caaaggaagattagcattaagaaggcattggatgcaaagattgcacgataccgagcccca
ttccaccaactgagaatccagtacggcaccaacaaagggaagaattacaccgaggaagaa
gataggttccttatatgcatgctgcataagttgggacttgagagggaatctgcatatgat
gagttacgtgctggtgtacggcaagctcctcagtttaggtttgactggtttataaagtca
agaacatcaatggagctacagcgacgttgcaacacccttataaccctcattgaacgtgag
aaccaagaacttgaggagagagacaaatacaatcctcttataaagaagaaggggaggaat
gatgtgacgcatcataaacgaaaagctgaggaaaatacggacgggaaggttaagaagaag
aaggaccattga
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integrated database retrieval system
