Ciona intestinalis (yellow sea squirt): 778989
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Entry
778989 CDS
T01056
Symbol
usf
Name
(RefSeq) transcription factor protein
KO
K09106
upstream stimulatory factor
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778989 (usf)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
Ubiquitous bHLH-ZIP factors
778989 (usf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_ILI
DUF2812
bHLH_NPAS4
Motif
Other DBs
NCBI-GeneID:
778989
NCBI-ProteinID:
NP_001072009
Ensembl:
ENSCING00000008157
UniProt:
Q4H2N1
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All DBs
Position
3:5997103..6001882
Genome browser
AA seq
325 aa
AA seq
DB search
MDISLDQALEQSEKHQDDLDDDSSELMQDVNVGEGLVTEDSEVGEVQGQEGLQTYQFRSG
DNGQVTYRVVQVGSEDNQQATLSIVTTNGIHNMLNQDAGGSGSPQVAIVTNPFNGDAEGA
GQSGDSDNSSAKFAYFSSGNPGNTQEIASGSESQDPQNVTGGQFYVMMSPQDMLQSNQVG
RSLAPRNHFVQKVDNSRSGGLVVRDTTRRVQHNEVERRRRDRINNWIMKLSKLVPDCQGD
HTKQGQSKGGILSKTCEYILDLQSSNQRLSDRMKGYERLQLDYEVLRVQMEEKKQENNIL
RQMLQSHGIEVAITNTSNNNQNQQQ
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atggatatttctttagaccaagccctggagcaaagtgagaaacatcaggacgaccttgat
gacgattcatctgaactcatgcaagatgtgaatgttggagaaggacttgttacagaggat
tcagaagtaggagaagttcagggccaagaaggtcttcaaacttatcagtttcgatctggt
gataacggacaggtcacatatcgagtagttcaagttggaagtgaggacaaccagcaagcc
acactaagcattgtaacaactaacggcattcataacatgctgaaccaagacgctggtggc
tcaggaagtccacaagttgcaattgttaccaaccctttcaacggagacgcagaaggagct
ggacaaagtggagattctgacaactcatcggcaaagtttgcttatttttcttcaggaaat
cctggcaacactcaggaaattgcatctggatcagaaagtcaggatccgcagaatgttaca
ggaggtcagttttatgtcatgatgtcaccacaagatatgttacaatcaaaccaagttggc
cgatcacttgcgccaaggaaccactttgttcaaaaagttgataattctcgctctggagga
ttagttgttcgcgatacaacaaggagagttcagcataatgaagttgaaagaaggagaaga
gatagaatcaacaactggatcatgaagttatcaaaactcgttccagattgccaaggggac
cataccaaacaaggacagagcaaaggaggaatcctgtccaaaacttgtgaatatatcctt
gacttgcaaagcagtaatcaacgattatcggacagaatgaaaggttatgaacgacttcaa
cttgattatgaagtcttacgagtccagatggaagagaaaaagcaggagaataatatatta
agacagatgcttcaatcgcacggaatagaagttgccatcacaaacacttcgaacaacaat
cagaaccagcagcaataa
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