Candidatus Campylobacter infans: CINF_0205
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Entry
CINF_0205 CDS
T07502
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cinf
Candidatus Campylobacter infans
Pathway
cinf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cinf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CINF_0205 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cinf03019
]
CINF_0205 (rnr)
03016 Transfer RNA biogenesis [BR:
cinf03016
]
CINF_0205 (rnr)
Enzymes [BR:
cinf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CINF_0205 (rnr)
Messenger RNA biogenesis [BR:
cinf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CINF_0205 (rnr)
Transfer RNA biogenesis [BR:
cinf03016
]
Prokaryotic type
tRNA degradation factors
CINF_0205 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
CSD2
OB_RNB
Terpene_synth
Motif
Other DBs
NCBI-ProteinID:
QLI04754
UniProt:
A0A7H9CKH0
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All DBs
Position
complement(208108..210039)
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AA seq
643 aa
AA seq
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MKTFLQGLSKGLDVTTSLNTENKELLRILESLKAISKYHNKFYLNNNFVIGKLDISQNAT
GYLNAYDERFKKDLLIQNRDLNAAHLGDIVLAKILKSKKDRVYAKILAVLVMANATSVVY
TKRFGNVVLGVNIQNGLSLNLRASQKSLKALPDGSVLKINNLNNEIIEVLGVLSDPSVDE
KISLSIYNKQDDFALACENEARAYGDSVDISMYKERVDLSDLAFCSIDPDDAKDYDDAIF
YDEKENALYVAIADVSEYVQNHSATDKAAKFRGFSIYFPHKCVPMLPRNLSENICSLKPD
AYRLAFIFKLSFDVNFNVIKDELFEGLIKSRARLTYGLVDEVLKGKKHLPNQNIQNFLLK
LAKITEILRQKRLLKGFDFRSKELKMSLDEAGLVKSTHYESDTPSHALIEDCMLLANIAA
AKRINQGIFRNHEPADMKKILYLIDDLAALGINATYESDLAKMIAKIQAKADEIGIREDV
DKLIIKAQKRAQYNNFSSGHFGLGFDTYTHFTSPIRRYSDLILHRLLKAKLKNDEKLFNY
LLETTQGLCESLNVLEREADKVAFDFMDRKFARWASANIGNSFICYISQASEPLVAILDD
EIKGARIFLPNYSCEILTKVLVRIVSSDIASTKIIGKVIKKLS
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacttttttacaaggtttgagtaaaggcttagatgttactactagccttaatacc
gaaaataaagagcttttaaggattttagaatccttaaaagccattagcaaatatcacaat
aaattttatttaaataataatttcgtaatcggcaaactagatatatcccaaaacgccacc
ggctatttaaacgcctacgatgaacgctttaaaaaagatttgcttatacaaaaccgcgac
ttaaacgctgctcatcttggtgatatagttttggctaaaattttaaaaagcaaaaaagat
agagtttatgctaaaattttagccgtgctagttatggcaaatgctacaagcgtggtttat
accaagcgttttggcaatgtggtgcttggggttaatatacaaaatggcctaagcttaaac
ttgcgcgctagccaaaaatccctaaaagctctccctgatggctctgtgctaaaaataaat
aacttaaataacgaaataatagaagttttaggcgttttaagcgatccaagcgtggatgaa
aaaatttctttatccatttataataaacaagatgatttcgctctggcttgcgaaaatgaa
gcaagggcttatggcgatagcgttgatattagtatgtataaagagcgcgtggatttaagc
gatcttgcattttgcagcattgatccagatgatgcaaaagactacgatgatgcgattttt
tacgatgaaaaagaaaacgccttatatgtagccatcgccgatgttagcgaatatgtccaa
aatcacagcgccactgataaagcagcaaaatttcgtggcttttctatatattttccacat
aaatgcgtgcctatgctaccgcgaaatttaagcgaaaatatctgctctttaaagccagat
gcttatcgcttggcttttatttttaagcttagttttgatgtaaattttaatgtgataaaa
gatgaattatttgagggccttattaaatcgcgcgctaggcttacttatggcttggttgat
gaagttttaaagggcaaaaaacatctcccaaaccaaaacattcaaaattttctcttaaaa
ctagccaaaattacagaaattttgcgacaaaaacgcctgttaaaaggctttgattttcgt
tcaaaagagcttaaaatgagcttagatgaagcaggcttagtaaaatcgacccattatgaa
agcgacacgccaagccacgctttgattgaagattgtatgcttttggcaaatatcgcagct
gcaaaacgcataaatcagggcatttttcgcaatcacgaaccagccgatatgaaaaaaatt
ttatatttaattgatgatttagccgctcttggcataaatgccacctatgaaagcgatcta
gccaaaatgatagccaaaatccaagcaaaagccgatgaaataggcattagagaagatgta
gataagctaatcatcaaagcacaaaaaagagcccaatacaataatttttcaagcgggcat
tttggcctaggctttgatacctacacgcattttactagcccgatccgcagatacagcgat
ttaatcttacaccgcttgctaaaagctaaattaaaaaacgatgaaaaactttttaattat
ttattagaaactacccaaggactttgcgagagtttaaatgttttagaaagagaagcagat
aaggtagcttttgattttatggatagaaaatttgcgcgctgggctagcgcaaatatcggc
aatagctttatttgctacattagccaagcaagcgagccactagttgctattttagatgat
gagattaaaggcgctaggatttttttgccaaattatagctgcgagatactaacaaaggtg
cttgtgcgcatagtttcaagcgatatagcaagcacaaaaattataggcaaagtaataaaa
aaattaagttaa
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